Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chloroplast thylakoid membrane

Term: GO:0009535  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene143409 SustainPine v3.0 398
• AutoFact: Glyceraldehyde-phosphate dehydrogenase n=6 Tax=Pinaceae RepID=Q41019_PINSY 5.99756e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glyceraldehyde-3-phosphate dehydrogenase subunit A 3.542e-37
C-terminus
sp_v3.0_unigene143505 SustainPine v3.0 597
• AutoFact: Major facilitator superfamily n=1 Tax=Medicago truncatula RepID=A2Q643_MEDTR 1.96182e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene143508 SustainPine v3.0 292
• AutoFact: Oxygen-evolving enhancer protein 2, chloroplastic n=1 Tax=Fritillaria agrestis RepID=PSBP_FRIAG 8.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE2 1.60028e-42
Internal
sp_v3.0_unigene143658 SustainPine v3.0 430
• AutoFact: 26S protease regulatory subunit 6B homolog n=13 Tax=Embryophyta RepID=PRS6B_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasomal ATPase 1.574e-13
Putative N-terminus
sp_v3.0_unigene143667 SustainPine v3.0 184
• AutoFact: Chlorophyll a-b binding protein type 2 member 1A, chloroplastic n=37 Tax=Spermatophyta RepID=CB2A_PINSY 4.0e-18
• FL-Next: sp=Chlorophyll a-b binding protein type 2 member 1A, chloroplastic; Pinus sylvestris (Scots pine). 0.0
• Sma3: LHCP 9.277e-22
Internal
sp_v3.0_unigene143674 SustainPine v3.0 263
• AutoFact: Transketolase, chloroplastic n=1 Tax=Solanum tuberosum RepID=TKTC_SOLTU 7.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: TK 7.622e-23
Internal
sp_v3.0_unigene143717 SustainPine v3.0 382
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene143730 SustainPine v3.0 973
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 2.527e-26
Complete
sp_v3.0_unigene143739 SustainPine v3.0 1182
• AutoFact: 26S protease regulatory subunit S10B homolog B n=24 Tax=Spermatophyta RepID=PS10B_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Proteasomal ATPase 1.545e-13
C-terminus
sp_v3.0_unigene143789 SustainPine v3.0 1020
• AutoFact: Cytochrome c oxidase subunit 6b n=1 Tax=Larix kaempferi RepID=C9EIK4_9CONI 8.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytochrome C oxidase polypeptide vib, putative 3.108e-13
Complete
sp_v3.0_unigene143804 SustainPine v3.0 575
• AutoFact: Oxygen-evolving enhancer protein 2 n=1 Tax=Sequoia sempervirens RepID=E5FXB2_SEQSE 9.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEC 23 kDa subunit 3.72e-27
N-terminus
sp_v3.0_unigene143880 SustainPine v3.0 324
• AutoFact: Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 (Fragment) n=1 Tax=Gossypium hirsutum RepID=Q9AXG0_GOSHI 2.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rubisco activase 1.117e-30
C-terminus
sp_v3.0_unigene144123 SustainPine v3.0 554
• AutoFact: cytochrome c oxidase family protein-like [Solanum tuberosum] 4.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytochrome c oxidase subunit Vb 2.835e-12
Putative Complete
sp_v3.0_unigene144291 SustainPine v3.0 845
• AutoFact: Chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase (Fragment) n=1 Tax=Morus alba var. multicaulis RepID=A8QIH7_MORAL 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Rubisco activase 1.496e-27
Misassembled
sp_v3.0_unigene144475 SustainPine v3.0 350
• AutoFact: Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 5.494e-16
N-terminus
sp_v3.0_unigene144502 SustainPine v3.0 878
• AutoFact: glutamine synthetase root isozyme 4 [Zea mays] sp|P38562.1|GLNA4_MAIZE RecName: Full=Glutamine synthetase root isozyme 4; AltName: Full=GS107; AltName: Full=Glutamate--ammonia ligase emb|CAA46722.1| glutamine synthetase [Zea mays] 7.0e-29
• FL-Next: sp=Glutamine synthetase cytosolic isozyme; Pinus sylvestris (Scots pine). 0.0
• Sma3: Glutamine synthetase 0.0
Misassembled
sp_v3.0_unigene144552 SustainPine v3.0 679
• AutoFact: organic cation/carnitine transporter4 [Arabidopsis thaliana] dbj|BAB02242.1| organic anion transporter-like protein [Arabidopsis thaliana] gb|AAR23714.1| At3g20660 [Arabidopsis thaliana] dbj|BAD44187.1| hypothetical protein [Arabidopsis thaliana] gb|AEE76 5.0e-14
• FL-Next: sp=Organic cation/carnitine transporter 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene144632 SustainPine v3.0 565
• AutoFact: Chlorophyll a/b-binding protein n=1 Tax=Picea glauca RepID=Q9LKZ0_PICGL 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 2.392e-16
Putative Complete
sp_v3.0_unigene144782 SustainPine v3.0 659
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Amino acid binding protein, putative 1.55e-07
C-terminus
sp_v3.0_unigene144963 SustainPine v3.0 390
• AutoFact: Chlorophyll a/b-binding protein n=1 Tax=Picea glauca RepID=Q9LKZ0_PICGL 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 6.163e-31
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain