Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chloroplast thylakoid membrane

Term: GO:0009535  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene129041 SustainPine v3.0 532
• AutoFact: Ribulose-5-phosphate-3-epimerase n=2 Tax=Papilionoideae RepID=Q8S4X2_PEA 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribulose-phosphate 3-epimerase, chloroplastic 4.479e-13
C-terminus
sp_v3.0_unigene129839 SustainPine v3.0 740
• AutoFact: Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9T135_RICCO 5.0e-21
• FL-Next: tr=Proline-rich protein; Pinus taeda (Loblolly pine). 0.0
• Sma3: 36.4 kDa proline-rich protein 3.248e-13
Misassembled
sp_v3.0_unigene130098 SustainPine v3.0 584
• AutoFact: Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Marchantia polymorpha RepID=Q8VXD7_MARPO 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glyceraldehyde-3-phosphate dehydrogenase subunit A 4.819e-30
C-terminus
sp_v3.0_unigene130141 SustainPine v3.0 266
• AutoFact: pfam00350, Dynamin_N, Dynamin family 7.0e-06
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dynamin, putative 1.971e-17
N-terminus
sp_v3.0_unigene130183 SustainPine v3.0 514
• AutoFact: Predicted protein n=2 Tax=Physcomitrella patens RepID=A9SNA2_PHYPA 6.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Allene oxide synthase 0.0
N-terminus
sp_v3.0_unigene130300 SustainPine v3.0 340
• AutoFact: Peroxisome biogenesis protein 1 n=2 Tax=Arabidopsis RepID=PEX1_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cell division cycle protein 48 2.33e-13
Internal
sp_v3.0_unigene130304 SustainPine v3.0 409
• AutoFact: chaperonin 20 [Arabidopsis thaliana] ref|NP_851045.1| chaperonin 20 [Arabidopsis thaliana] ref|NP_001190350.1| chaperonin 20 [Arabidopsis thaliana] ref|XP_002871956.1| hypothetical protein ARALYDRAFT_488978 [Arabidopsis lyrata subsp. lyrata] sp|O65282.2|C 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative 20 kDa chaperonin, chloroplast 1.869e-08
Internal
sp_v3.0_unigene130363 SustainPine v3.0 297
• AutoFact: RecName: Full=Ribulose-phosphate 3-epimerase, chloroplastic; AltName: Full=Pentose-5-phosphate 3-epimerase; Short=PPE; AltName: Full=R5P3E; Short=RPE; Flags: Precursor emb|CAA90426.1| pentose-5-phosphate-3-epimerase [Solanum tuberosum] 7.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentose-5-phosphate 3-epimerase 2.675e-16
Putative C-terminus
sp_v3.0_unigene130532 SustainPine v3.0 307
• AutoFact: Putative lipoxygenase (Fragment) n=1 Tax=Capsicum annuum RepID=Q1HLZ7_CAPAN 7.0e-39
• FL-Next: sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis). 0.0
• Sma3: Lipoxygenase 0.0
Internal
sp_v3.0_unigene130934 SustainPine v3.0 315
• AutoFact: Dynamin-related protein 1A n=3 Tax=Poaceae RepID=B6U4J8_MAIZE 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dynamin, putative 3.627e-17
Internal
sp_v3.0_unigene131169 SustainPine v3.0 304
• AutoFact: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic n=1 Tax=Solanum lycopersicum RepID=CLPAA_SOLLC 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene131383 SustainPine v3.0 270
• AutoFact: putative GTP-binding protein [Oryza sativa Japonica Group] gb|ABF98531.1| Dynamin-related protein 1C, putative, expressed [Oryza sativa Japonica Group] dbj|BAH01687.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEC76063.1| hypothetical prote 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dynamin, putative 2.008e-24
Internal
sp_v3.0_unigene131490 SustainPine v3.0 372
• AutoFact: Putative desaturase-like protein n=1 Tax=Trifolium repens RepID=Q17UU7_TRIRP 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Mg-protoporphyrin IX monomethyl ester oxidative cyclase 2.185e-32
Misassembled
sp_v3.0_unigene131603 SustainPine v3.0 574
• AutoFact: Type III chlorophyll a /b-binding protein n=2 Tax=Pinaceae RepID=Q02071_PINSY 0.0
• FL-Next: tr=Type III chlorophyll a /b-binding protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Chloroplast light-harvesting complex I protein Lhca3 7.688e-16
Internal
sp_v3.0_unigene132428 SustainPine v3.0 334
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=1 Tax=Picea sitchensis RepID=A9NK21_PICSI 2.0e-34
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
N-terminus
sp_v3.0_unigene133027 SustainPine v3.0 404
• AutoFact: Ribulose-5-phosphate-3-epimerase n=2 Tax=Papilionoideae RepID=Q8S4X2_PEA 3.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribulose-phosphate 3-epimerase, chloroplastic 3.528e-13
C-terminus
sp_v3.0_unigene133664 SustainPine v3.0 543
• AutoFact: Ribulose-phosphate 3-epimerase n=1 Tax=Ricinus communis RepID=B9RLW1_RICCO 5.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribulose-phosphate 3-epimerase, chloroplastic 3.602e-13
Putative C-terminus
sp_v3.0_unigene134991 SustainPine v3.0 309
• AutoFact: D-ribulose-5-phosphate-3-epimerase n=2 Tax=Arabidopsis RepID=Q9SAU2_ARATH 3.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentose-5-phosphate 3-epimerase 3.06e-16
Internal
sp_v3.0_unigene135662 SustainPine v3.0 458
• AutoFact: Chlorophyll a-b binding protein 2 n=1 Tax=Zea mays RepID=B6SZ08_MAIZE 0.0
• FL-Next: tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: LHCP 1.092e-30
Internal
sp_v3.0_unigene135720 SustainPine v3.0 553
• AutoFact: Lipoxygenase n=1 Tax=Corylus avellana RepID=Q93YI8_CORAV 1.4013e-45
• FL-Next: sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis). 0.0
• Sma3: Lipoxygenase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain