Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: chloroplast thylakoid membrane

Term: GO:0009535  Help

Source: GO from Sma3

Ontology: Cellular Component

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene126851 SustainPine v3.0 977
• AutoFact: nucleic acid binding protein1 [Zea mays] gb|AAA33486.1| nucleic acid-binding protein [Zea mays] gb|ACG38158.1| ribonucleoprotein [Zea mays] gb|ACL52389.1| unknown [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribonucleoprotein 3.69e-17
C-terminus
sp_v3.0_unigene126858 SustainPine v3.0 1416
• AutoFact: Chloroplast oxygen-evolving protein (Fragment) n=1 Tax=Arachis diogoi RepID=E3NYU3_9FABA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE3 5.166e-25
Putative Complete
sp_v3.0_unigene127011 SustainPine v3.0 820
• AutoFact: Chlorophyll a-b binding protein 151, chloroplastic n=18 Tax=Magnoliophyta RepID=CB21_GOSHI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 4.278e-31
Complete
sp_v3.0_unigene127118 SustainPine v3.0 602
• AutoFact: glyceraldehyde-3-phosphate dehydrogenase [Marchantia polymorpha] 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glyceraldehyde-3-phosphate dehydrogenase subunit A 5.122e-33
C-terminus
sp_v3.0_unigene127156 SustainPine v3.0 1214
• AutoFact: Type II chlorophyll a /b-binding protein n=3 Tax=Pinaceae RepID=Q02070_PINSY 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chlorophyll A/B binding protein, putative 5.512e-17
Complete
sp_v3.0_unigene127301 SustainPine v3.0 647
• AutoFact: Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI 0.0
• FL-Next: sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine). 0.0
• Sma3: Peptidyl-prolyl cis-trans isomerase 0.0
C-terminus
sp_v3.0_unigene127304 SustainPine v3.0 1619
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene127445 SustainPine v3.0 1016
• AutoFact: chlorophyll a/b-binding protein [Pinus thunbergii] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: LHCP 7.591e-31
Misassembled
sp_v3.0_unigene127539 SustainPine v3.0 1101
• AutoFact: Oxygen-evolving enhancer protein 2 n=1 Tax=Sequoia sempervirens RepID=E5FXB2_SEQSE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: OEE2 3.426e-35
Complete
sp_v3.0_unigene127542 SustainPine v3.0 616
• AutoFact: molecular chaperone DjA2 [Allium ampeloprasum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DnaJ protein 1.482e-18
N-terminus
sp_v3.0_unigene127878 SustainPine v3.0 567
• AutoFact: molecular chaperone DjA2 [Allium ampeloprasum] 9.99995e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DnaJ-like protein 1.078e-22
N-terminus
sp_v3.0_unigene127961 SustainPine v3.0 614
• AutoFact: Ribulose bisphosphate carboxylase small chain PW9, chloroplastic n=52 Tax=Pooideae RepID=RBS2_WHEAT 0.0
• FL-Next: sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
• Sma3: Ribulose bisphosphate carboxylase small chain 0.0
C-terminus
sp_v3.0_unigene128041 SustainPine v3.0 945
• AutoFact: Type II chlorophyll a /b-binding protein n=3 Tax=Pinaceae RepID=Q02070_PINSY 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chlorophyll A/B binding protein, putative 5.65e-18
C-terminus
sp_v3.0_unigene128173 SustainPine v3.0 944
• AutoFact: glyceraldehyde-3-phosphate dehydrogenase B subunit [Glycine max] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glyceraldehyde-3-phosphate dehydrogenase 0.0
Internal
sp_v3.0_unigene128177 SustainPine v3.0 1034
• AutoFact: Unassigned protein
• FL-Next: sp=Uncharacterized protein At3g49720; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene128337 SustainPine v3.0 463
• AutoFact: Allene oxide cyclase n=1 Tax=Pisum sativum RepID=Q3LI84_PEA 1.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Allene oxide cyclase 1.939e-40
Internal
sp_v3.0_unigene128392 SustainPine v3.0 642
• AutoFact: ATP-dependent Clp protease proteolytic subunit n=1 Tax=Picea sitchensis RepID=A9P1N5_PICSI 0.0
• FL-Next: sp=ATP-dependent Clp protease proteolytic subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent Clp protease proteolytic subunit 0.0
C-terminus
sp_v3.0_unigene128589 SustainPine v3.0 511
• AutoFact: Translation elongation factor-TU (Fragment) n=1 Tax=Glycine max RepID=O23962_SOYBN 4.0e-10
• FL-Next: sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: EF-Tu 0.0
C-terminus
sp_v3.0_unigene128752 SustainPine v3.0 205
• AutoFact: chaperonin 21 precursor [Solanum lycopersicum] 3.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative 20 kDa chaperonin, chloroplast 8.801e-09
Internal
sp_v3.0_unigene128922 SustainPine v3.0 470
• AutoFact: Unassigned protein
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain