Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: circadian rhythm

Term: GO:0007623  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene124681 SustainPine v3.0 263
• AutoFact: response regulator protein [Dianthus caryophyllus] 2.0e-12
• FL-Next: tr=Response regulator 1; Pinus pinea (Italian stone pine). 0.0
• Sma3: Type-a response regulator 4.484e-28
Putative C-terminus
sp_v3.0_unigene127304 SustainPine v3.0 1619
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene128812 SustainPine v3.0 661
• AutoFact: MAP kinase-like protein n=1 Tax=Gossypium hirsutum RepID=Q7Y236_GOSHI 8.00141e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 7.699e-33
N-terminus
sp_v3.0_unigene129940 SustainPine v3.0 452
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSS7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 6.44597e-44
Internal
sp_v3.0_unigene132296 SustainPine v3.0 263
• AutoFact: MAP kinase-like protein [Gossypium hirsutum] 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 9.452e-40
Putative C-terminus
sp_v3.0_unigene132766 SustainPine v3.0 443
• AutoFact: Superoxide dismutase n=1 Tax=Pinus pinaster RepID=Q6QJL0_PINPS 9.0e-31
• FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Superoxide dismutase 8.81136e-42
N-terminus
sp_v3.0_unigene133104 SustainPine v3.0 367
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSS7_RICCO 3.99931e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 8.06503e-41
Internal
sp_v3.0_unigene139787 SustainPine v3.0 464
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 3.0e-33
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
N-terminus
sp_v3.0_unigene144821 SustainPine v3.0 550
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSS7_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 5.74532e-44
C-terminus
sp_v3.0_unigene144841 SustainPine v3.0 501
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSS7_RICCO 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 4.2039e-44
C-terminus
sp_v3.0_unigene144925 SustainPine v3.0 352
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SSS7_RICCO 6.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 1.008e-39
C-terminus
sp_v3.0_unigene146180 SustainPine v3.0 1024
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.0e-36
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene146440 SustainPine v3.0 438
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 6.0e-30
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative N-terminus
sp_v3.0_unigene147216 SustainPine v3.0 696
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 7.00005e-41
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene152637 SustainPine v3.0 506
• AutoFact: glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40] dbj|BAE56344.1| unnamed protein product [Aspergillus oryzae RIB40] 2.0e-17
• FL-Next: tr=Glycine-rich RNA-binding protein; Sequoia sempervirens (California redwood) (Taxodium sempervirens). 0.0
• Sma3: Glycine-rich RNA-binding protein 1.586e-36
N-terminus
sp_v3.0_unigene153738 SustainPine v3.0 549
• AutoFact: Superoxide dismutase n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SIP7_METPP 0.0
• FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Superoxide dismutase 0.0
C-terminus
sp_v3.0_unigene154405 SustainPine v3.0 493
• AutoFact: Superoxide dismutase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EWL0_SORC5 9.00054e-42
• FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Superoxide dismutase 0.0
C-terminus
sp_v3.0_unigene154778 SustainPine v3.0 435
• AutoFact: Superoxide dismutase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XJ06_HIRBI 0.0
• FL-Next: sp=Superoxide dismutase; Pinus pinaster (Maritime pine). 0.0
• Sma3: Superoxide dismutase 0.0
Internal
sp_v3.0_unigene155915 SustainPine v3.0 514
• AutoFact: putative serine/threonine-protein kinase WNK5 [Arabidopsis thaliana] ref|NP_001190056.1| putative serine/threonine-protein kinase WNK5 [Arabidopsis thaliana] sp|Q9SCU5.2|WNK5_ARATH RecName: Full=Probable serine/threonine-protein kinase WNK5; Short=AtWNK5; 3.0e-08
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: With no lysine kinase 1.997e-19
Putative N-terminus
sp_v3.0_unigene157043 SustainPine v3.0 603
• AutoFact: Superoxide dismutase n=1 Tax=Ectocarpus siliculosus RepID=D8LI17_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Superoxide dismutase 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain