Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: double-stranded DNA binding

Term: GO:0003690  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene195 SustainPine v3.0 3806
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 8.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene408 SustainPine v3.0 725
• AutoFact: DUF296 domain containing protein 3.0e-06
• Sma3: ESC, putative 2.502e-08
coding
sp_v3.0_unigene885 SustainPine v3.0 2565
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9RDJ8_RICCO 0.0
• FL-Next: sp=Flap endonuclease GEN-like 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Flap endonuclease GEN-like 1 2.643e-09
Complete
sp_v3.0_unigene1501 SustainPine v3.0 904
• AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-31
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Cold-shock protein with RNA binding domain 4.18e-08
Putative Complete
sp_v3.0_unigene2133 SustainPine v3.0 1744
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STJ6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT-hook DNA-binding protein 8.451e-18
Complete
sp_v3.0_unigene2244 SustainPine v3.0 1708
• AutoFact: DUF296 domain containing protein 1.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein-like 4.289e-29
Complete
sp_v3.0_unigene3274 SustainPine v3.0 640
• AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 1.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 6.23199e-41
N-terminus
sp_v3.0_unigene3305 SustainPine v3.0 4215
• AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 1.959e-11
Complete
sp_v3.0_unigene4289 SustainPine v3.0 525
• AutoFact: Os02g0203000 protein n=2 Tax=Oryza sativa RepID=Q0E2Y8_ORYSJ 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transcription factor HY5 1.887e-18
Putative Complete
sp_v3.0_unigene6372 SustainPine v3.0 2622
• AutoFact: Ku70 homolog [Populus nigra] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ku70-like protein 4.296e-09
Complete
sp_v3.0_unigene6887 SustainPine v3.0 2461
• AutoFact: ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana] 0.0
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 5.716e-07
C-terminus
sp_v3.0_unigene8881 SustainPine v3.0 1880
• AutoFact: Ubiquitin carboxyl-terminal hydrolase 12 n=8 Tax=Brassicaceae RepID=UBP12_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase 4.139e-09
Complete
sp_v3.0_unigene10685 SustainPine v3.0 930
• AutoFact: ESC, putative n=1 Tax=Ricinus communis RepID=B9RDE5_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein-like 7.494e-23
Complete
sp_v3.0_unigene11629 SustainPine v3.0 1811
• AutoFact: AT-hook DNA-binding protein [Catharanthus roseus] 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein-like 1.152e-22
Putative Complete
sp_v3.0_unigene12788 SustainPine v3.0 513
• AutoFact: RNA-binding protein n=1 Tax=Nicotiana tabacum RepID=Q941H9_TOBAC 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.616e-06
N-terminus
sp_v3.0_unigene17592 SustainPine v3.0 1048
• AutoFact: RNA binding protein [Nicotiana sylvestris] gb|ADG03640.1| RNA-binding glycine-rich protein [Nicotiana tabacum] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Complete
sp_v3.0_unigene18326 SustainPine v3.0 2630
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene21141 SustainPine v3.0 1075
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 2.0e-22
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene21606 SustainPine v3.0 533
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 9.0e-29
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative N-terminus
sp_v3.0_unigene21865 SustainPine v3.0 552
• AutoFact: RNA-binding protein precursor [Nicotiana tabacum] 2.0e-15
• FL-Next: tr=Glycine-rich RNA-binding protein; Sequoia sempervirens (California redwood) (Taxodium sempervirens). 0.0
• Sma3: RNA-binding protein 3.116e-06
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain