Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: double-stranded DNA binding

Term: GO:0003690  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene23340 SustainPine v3.0 880
• AutoFact: DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9STJ6_RICCO 4.06377e-44
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ESC, putative 2.932e-15
C-terminus
sp_v3.0_unigene24891 SustainPine v3.0 423
• AutoFact: Putative glycine-rich RNA-binding protein 2 n=1 Tax=Bambusa oldhamii RepID=B5KLZ7_BAMOL 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 7.67e-26
N-terminus
sp_v3.0_unigene25442 SustainPine v3.0 841
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.99993e-41
• FL-Next: tr=Glycine-rich RNA-binding protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene26913 SustainPine v3.0 559
• AutoFact: glycine-rich RNA-binding protein 4 [Arabidopsis thaliana] ref|NP_850629.1| glycine-rich RNA-binding protein 4 [Arabidopsis thaliana] dbj|BAB03001.1| glycine-rich RNA binding protein-like [Arabidopsis thaliana] gb|AAL50093.1| AT3g23830/F14O13_2 [Arabidopsi 3.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein, putative 7.666e-07
Complete
sp_v3.0_unigene28392 SustainPine v3.0 1219
• AutoFact: ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb|AAK25908.1|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AAN13185.1| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb|AED91040.1| ubiq 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 1.047e-06
Putative Complete
sp_v3.0_unigene29923 SustainPine v3.0 964
• AutoFact: glycine-rich RNA-binding protein [Physcomitrella patens] 4.0e-25
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene32133 SustainPine v3.0 466
• AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 3.99931e-42
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Complete
sp_v3.0_unigene32211 SustainPine v3.0 1082
• AutoFact: AT-hook DNA-binding protein n=1 Tax=Catharanthus roseus RepID=A1DR80_CATRO 0.0
• FL-Next: tr=AT-hook DNA-binding protein; Catharanthus roseus (Madagascar periwinkle) (Vinca rosea). 0.0
• Sma3: DNA-binding protein-like 1.414e-19
Complete
sp_v3.0_unigene32943 SustainPine v3.0 839
• AutoFact: Glycine-rich RNA-binding protein n=1 Tax=Sequoia sempervirens RepID=E5FXB3_SEQSE 9.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene34499 SustainPine v3.0 749
• AutoFact: Glycine-rich RNA-binding protein n=4 Tax=Pinaceae RepID=Q9XEL4_PICGL 1.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Putative Complete
sp_v3.0_unigene36070 SustainPine v3.0 909
• AutoFact: AT-hook DNA-binding protein [Catharanthus roseus] 4.00001e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AT-hook DNA-binding protein 6.453e-18
C-terminus
sp_v3.0_unigene36313 SustainPine v3.0 810
• AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 6.0e-19
• FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Putative RSZp22 splicing factor 4.422e-08
Complete
sp_v3.0_unigene37860 SustainPine v3.0 809
• AutoFact: Chalcone synthase (Fragment) n=4 Tax=Pseudotsuga RepID=C6F7B7_PSEMZ 2.0e-18
• FL-Next: tr=Pinocembrin chalcone synthase; Pinus densiflora (Japanese red pine). 0.0
• Sma3: Glycine-rich RNA-binding protein 4.62428e-44
C-terminus
sp_v3.0_unigene40663 SustainPine v3.0 1535
• AutoFact: AT-hook DNA-binding protein n=1 Tax=Catharanthus roseus RepID=A1DR80_CATRO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein-like 4.918e-29
Complete
sp_v3.0_unigene42348 SustainPine v3.0 940
• AutoFact: DUF296 domain containing protein 3.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein-like 3.543e-29
N-terminus
sp_v3.0_unigene49451 SustainPine v3.0 1044
• AutoFact: AT-hook DNA-binding protein n=1 Tax=Catharanthus roseus RepID=A1DR80_CATRO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-binding protein-like 6.77e-26
N-terminus
sp_v3.0_unigene55647 SustainPine v3.0 184
• AutoFact: putative ubiquitin-specific protease [Oryza sativa Japonica Group] 7.0e-08
• FL-Next: Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 7.073e-07
Internal
sp_v3.0_unigene58745 SustainPine v3.0 238
• AutoFact: putative ubiquitin protease [Oryza sativa Indica Group] 2.0e-18
• FL-Next: sp=Ubiquitin carboxyl-terminal hydrolase 13; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 7.14e-07
Internal
sp_v3.0_unigene59658 SustainPine v3.0 238
• AutoFact: ubiquitin carboxyl-terminal hydrolase [Arabidopsis thaliana] 2.0e-27
• FL-Next: Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 0.0
• Sma3: Ubiquitin carboxyl-terminal hydrolase, putative 9.059e-07
Internal
sp_v3.0_unigene62996 SustainPine v3.0 198
• AutoFact: RecName: Full=ATP-dependent DNA helicase 2 subunit KU80; AltName: Full=ATP-dependent DNA helicase 2 subunit 2; AltName: Full=ATP-dependent DNA helicase II 80 kDa subunit gb|AAS01977.1| putative H-box binding protein, KAP2, with alternative splicing isofor 8.0e-17
• FL-Next: tr=KU80-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: KAP-2 2.848e-13
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain