Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin modification

Term: GO:0016568  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene190 SustainPine v3.0 1747
• AutoFact: histone deacetylase 15 [Arabidopsis thaliana] gb|AEE76110.1| histone deacetylase 15 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone deacetylase 4.049e-14
C-terminus
sp_v3.0_unigene417 SustainPine v3.0 1675
• AutoFact: histone-lysine N-methyltransferase ATXR6 [Arabidopsis thaliana] sp|Q9FNE9.1|ATXR6_ARATH RecName: Full=Histone-lysine N-methyltransferase ATXR6; AltName: Full=Protein SET DOMAIN GROUP 34; AltName: Full=Trithorax-related protein 6; Short=TRX-related protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone-lysine N-methyltransferase ATXR6, putative 6.584e-09
Complete
sp_v3.0_unigene770 SustainPine v3.0 1974
• AutoFact: Brushy protein, putative n=1 Tax=Ricinus communis RepID=B9RTZ8_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene983 SustainPine v3.0 3457
• AutoFact: Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9R8W9_RICCO 0.0
• FL-Next: sp=Histone-lysine N-methyltransferase ATX2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SET domain protein 1.535e-15
Putative Complete
sp_v3.0_unigene1575 SustainPine v3.0 2462
• AutoFact: E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] gb|ABJ17142.1| At1g55255 [Arabidopsis thaliana] gb|AEE33211.1| E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone ubiquitination proteins group 1.374e-08
Complete
sp_v3.0_unigene1601 SustainPine v3.0 1451
• AutoFact: histone deacetylase 2 [Arabidopsis thaliana] sp|Q944K3.2|HDA2_ARATH RecName: Full=Histone deacetylase 2 gb|AED93517.1| histone deacetylase 2 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Class III RPD3 type histone deacetylase protein 9.277e-10
Complete
sp_v3.0_unigene1615 SustainPine v3.0 1769
• AutoFact: Histone-lysine N-methyltransferase ASHR2 n=2 Tax=Arabidopsis thaliana RepID=ASHR2_ARATH 0.0
• FL-Next: Isoform 2 of Histone-lysine N-methyltransferase ASHR2 OS=Arabidopsis thaliana GN=ASHR2 0.0
Complete
sp_v3.0_unigene1639 SustainPine v3.0 3214
• AutoFact: Arsenite-resistance protein, putative n=1 Tax=Ricinus communis RepID=B9S6M6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: C2H2 zinc-finger protein SERRATE 3.983e-09
Complete
sp_v3.0_unigene1659 SustainPine v3.0 1661
• AutoFact: histone deacetylase 14 [Arabidopsis thaliana] sp|Q941D6.1|HDA14_ARATH RecName: Full=Histone deacetylase 14 gb|AAK97704.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AAM47377.1| AT4g33470/F17M5_230 [Arabidopsis thaliana] gb|AEE86231.1| histone deacetyla 0.0
• FL-Next: sp=Histone deacetylase 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histone deacetylase 2.116e-22
Complete
sp_v3.0_unigene1707 SustainPine v3.0 1286
• AutoFact: Sex determining protein n=3 Tax=Mus musculus musculus RepID=O35861_MOUSE 4.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Transposon protein, putative, CACTA, En/Spm sub-class, expressed 3.394e-17
Complete
sp_v3.0_unigene1880 SustainPine v3.0 2920
• AutoFact: protein HIRA [Zea mays] sp|Q32SG6.1|HIRA_MAIZE RecName: Full=Protein HIRA; AltName: Full=Histone regulator protein gb|AAY24681.1| HIRA [Zea mays] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein HIRA 2.785e-13
C-terminus
sp_v3.0_unigene1967 SustainPine v3.0 1085
• AutoFact: Gly_rich multi-domain protein 4.0e-17
• Sma3: Glycine-rich protein 4.555e-14
coding
sp_v3.0_unigene2179 SustainPine v3.0 860
• AutoFact: Probable histone acetyltransferase HAC-like 1 n=4 Tax=Poaceae RepID=HACL1_ORYSJ 0.0
• FL-Next: sp=Probable histone acetyltransferase HAC-like 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Histone acetyltransferase 1.638e-13
Internal
sp_v3.0_unigene2256 SustainPine v3.0 3772
• AutoFact: E3 ubiquitin-protein ligase BRE1-like 1 [Arabidopsis thaliana] sp|Q8RXD6.1|BRE1A_ARATH RecName: Full=E3 ubiquitin-protein ligase BRE1-like 1; Short=AtBRE1; AltName: Full=Protein HISTONE MONOUBIQUITINATION 1; Short=AtHUB1 gb|AAL91211.1| unknown protein [Ar 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone ubiquitination proteins group 1.003e-08
Complete
sp_v3.0_unigene2454 SustainPine v3.0 2940
• AutoFact: Cytosine-specific methyltransferase n=1 Tax=Elaeis guineensis RepID=B4XTS9_ELAGV 0.0
• FL-Next: sp=DNA (cytosine-5)-methyltransferase 3; Zea mays (Maize). 0.0
• Sma3: Cytosine-specific methyltransferase 1.644e-28
C-terminus
sp_v3.0_unigene2504 SustainPine v3.0 2351
• AutoFact: SWI/SNF complex component SNF12 homolog n=2 Tax=Arabidopsis RepID=SNF12_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SWI/SNF transcription activation complex subunit 4.502e-14
Complete
sp_v3.0_unigene2549 SustainPine v3.0 1984
• AutoFact: Nucleosome remodeling factor, p48 subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RJC1_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nucleosome/chromatin assembly factor group 2.48e-09
Complete
sp_v3.0_unigene2639 SustainPine v3.0 1416
• AutoFact: SET domain protein [Triticum aestivum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SET domain protein 3.923e-08
C-terminus
sp_v3.0_unigene2751 SustainPine v3.0 1434
• AutoFact: Trithorax, putative n=1 Tax=Ricinus communis RepID=B9RII0_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Trithorax, putative 2.532e-08
Putative Complete
sp_v3.0_unigene3232 SustainPine v3.0 1107
• AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 0.0
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein LSD1-LIKE 2 1.869e-08
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain