Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromatin modification

Term: GO:0016568  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene40893 SustainPine v3.0 628
AutoFact: Unassigned protein
FL-Next: sp=Protein TONSOKU; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene40914 SustainPine v3.0 1423
AutoFact: actin-related protein 6 [Arabidopsis arenosa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Actin-related protein 6 1.474e-16
C-terminus
sp_v3.0_unigene41084 SustainPine v3.0 345
AutoFact: putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical protein [Ipomoea trifida] 1.0e-32
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 1.7e-07
Internal
sp_v3.0_unigene41284 SustainPine v3.0 822
AutoFact: Gly_rich multi-domain protein 2.0e-21
Sma3: Glycine-rich cell wall structural protein 2 5.957e-17
coding
sp_v3.0_unigene41867 SustainPine v3.0 236
AutoFact: histone acetyltransferase HAC12 [Arabidopsis thaliana] sp|Q9FWQ5.2|HAC12_ARATH RecName: Full=Histone acetyltransferase HAC12 gb|AEE29487.1| histone acetyltransferase HAC12 [Arabidopsis thaliana] 3.0e-36
FL-Next: sp=Histone acetyltransferase HAC12; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone acetyltransferase 1.12e-13
Internal
sp_v3.0_unigene42111 SustainPine v3.0 123
AutoFact: Transcription cofactor, putative n=1 Tax=Ricinus communis RepID=B9RHR9_RICCO 3.0e-11
FL-Next: Isoform 2 of Histone acetyltransferase HAC1 OS=Arabidopsis thaliana GN=HAC1 0.0
Sma3: p300/CBP acetyltransferase-related protein 2.202e-08
Internal
sp_v3.0_unigene42444 SustainPine v3.0 1415
AutoFact: Phd finger protein, putative n=1 Tax=Ricinus communis RepID=B9SP39_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 1.141e-12
Putative Complete
sp_v3.0_unigene42735 SustainPine v3.0 212
AutoFact: Set domain protein, putative n=1 Tax=Ricinus communis RepID=B9SQW4_RICCO 2.0e-28
FL-Next: sp=Histone-lysine N-methyltransferase ASHR3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20specific 1.113e-08
Internal
sp_v3.0_unigene42926 SustainPine v3.0 452
AutoFact: SNF2 superfamily RAD5 protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S188_PHYPA 2.0e-30
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.343e-07
Internal
sp_v3.0_unigene43699 SustainPine v3.0 386
AutoFact: Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SZ00_RICCO 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone-lysine n-methyltransferase, suvh, putative 6.06e-10
Internal
sp_v3.0_unigene44968 SustainPine v3.0 147
AutoFact: Amine oxidase, putative n=1 Tax=Ricinus communis RepID=B9SUC7_RICCO 4.0e-08
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein LSD1-LIKE 3 5.331e-09
Internal
sp_v3.0_unigene45685 SustainPine v3.0 141
AutoFact: Flavin-containing amine oxidase domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SUY7_RICCO 1.0e-14
FL-Next: sp=Lysine-specific histone demethylase 1 homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Protein LSD1-LIKE 2 1.208e-08
Internal
sp_v3.0_unigene47636 SustainPine v3.0 227
AutoFact: histon acetyltransferase HAT1 [Arabidopsis thaliana] 2.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone acetyltransferase 1.024e-12
Putative C-terminus
sp_v3.0_unigene48118 SustainPine v3.0 334
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 5.61e-14
Internal
sp_v3.0_unigene48155 SustainPine v3.0 741
AutoFact: zinc binding motif and SET domain-containing protein [Arabidopsis thaliana] gb|AEC07483.1| zinc binding motif and SET domain-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Histone-lysine N-methyltransferase SUVR5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene48934 SustainPine v3.0 202
AutoFact: Probable histone acetyltransferase HAC-like 1 n=4 Tax=Poaceae RepID=HACL1_ORYSJ 9.0e-34
FL-Next: sp=Probable histone acetyltransferase HAC-like 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Histone acetyltransferase 5.081e-14
Internal
sp_v3.0_unigene48959 SustainPine v3.0 172
AutoFact: YDG_SRA domain containing protein 1.0e-14
FL-Next: sp=Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene49588 SustainPine v3.0 1527
AutoFact: Histone-lysine n-methyltransferase, suvh, putative n=1 Tax=Ricinus communis RepID=B9SHW2_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SET domain protein 8.329e-20
Putative N-terminus
sp_v3.0_unigene50040 SustainPine v3.0 265
AutoFact: histone-lysine N-methyltransferase ATX5 [Arabidopsis thaliana] sp|Q8GZ42.1|ATX5_ARATH RecName: Full=Histone-lysine N-methyltransferase ATX5; AltName: Full=Protein SET DOMAIN GROUP 29; AltName: Full=Trithorax-homolog protein 5; Short=TRX-homolog protein 5 1.0e-13
FL-Next: sp=Histone-lysine N-methyltransferase ATX5; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene50399 SustainPine v3.0 128
Sma3: Chromatin remodeling factor subunit 5.207e-13
unknown

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain