Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene16345 SustainPine v3.0 520
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35030, mitochondrial; Flags: Precursor gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana] gb|A 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 7.683e-23
Internal
sp_v3.0_unigene16783 SustainPine v3.0 1014
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene17289 SustainPine v3.0 2209
• AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 1.22e-15
C-terminus
sp_v3.0_unigene17530 SustainPine v3.0 763
• AutoFact: polypyrimidine track-binding protein homologue [Cicer arietinum] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene17592 SustainPine v3.0 1048
• AutoFact: RNA binding protein [Nicotiana sylvestris] gb|ADG03640.1| RNA-binding glycine-rich protein [Nicotiana tabacum] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 0.0
Complete
sp_v3.0_unigene17797 SustainPine v3.0 1938
• AutoFact: CRS2-associated factor 1, chloroplastic precursor [Zea mays] sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 1; Flags: Precursor gb|AAP 4.0e-07
• FL-Next: sp=CRS2-associated factor 1, chloroplastic; Oryza sativa subsp. japonica (Rice). 0.0
C-terminus
sp_v3.0_unigene17968 SustainPine v3.0 1023
• AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 3.00018e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 6.102e-16
C-terminus
sp_v3.0_unigene17984 SustainPine v3.0 1189
• AutoFact: LUC7 related protein [Arabidopsis thaliana] gb|AAK96571.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb|AAL36075.1| AT5g17440/K3M16_10 [Arabidopsis thaliana] gb|AED92426.1| LUC7 related protein [Arabidopsis thaliana] 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene18326 SustainPine v3.0 2630
• AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene18470 SustainPine v3.0 1041
• AutoFact: serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] gb|AEE79109.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] 5.00264e-43
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 6.254e-16
C-terminus
sp_v3.0_unigene18726 SustainPine v3.0 1007
• AutoFact: Tymo_45kd_70kd multi-domain protein 1.0e-10
• Sma3: Putative arginine/serine-rich protein 3.506e-09
coding
sp_v3.0_unigene20443 SustainPine v3.0 442
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_818.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TRX8_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Spliceosome associated protein-like 3.954e-09
Putative C-terminus
sp_v3.0_unigene20701 SustainPine v3.0 1632
• AutoFact: DEAD-box ATP-dependent RNA helicase 37 [Arabidopsis thaliana] sp|Q84W89.2|RH37_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 37 gb|AAD23001.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana] gb|AEC10133.1| DEAD-box ATP-dependent RNA h 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dead box ATP-dependent RNA helicase, putative 2.676e-24
C-terminus
sp_v3.0_unigene20862 SustainPine v3.0 636
• AutoFact: U2 snrnp auxiliary factor, small subunit, putative n=1 Tax=Ricinus communis RepID=B9SRG2_RICCO 1.4013e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 2.683e-11
Internal
sp_v3.0_unigene20933 SustainPine v3.0 1492
• AutoFact: serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] gb|AEE84950.1| serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 7.232e-16
C-terminus
sp_v3.0_unigene21051 SustainPine v3.0 1932
• AutoFact: Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 6.332e-16
C-terminus
sp_v3.0_unigene21227 SustainPine v3.0 1170
• AutoFact: serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] gb|AEE79109.1| serine/threonine-protein kinase AFC1 [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 1.098e-15
C-terminus
sp_v3.0_unigene21407 SustainPine v3.0 882
• AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 8.416e-16
C-terminus
sp_v3.0_unigene21440 SustainPine v3.0 1298
• AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 6.332e-16
C-terminus
sp_v3.0_unigene21549 SustainPine v3.0 683
• AutoFact: Afc, putative n=1 Tax=Ricinus communis RepID=B9T436_RICCO 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 5.109e-16
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain