Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: mRNA processing

Term: GO:0006397  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene64129 SustainPine v3.0 274
• AutoFact: Maturase K n=33 Tax=Cupressaceae RepID=Q9MSV0_9CONI 7.0e-27
• FL-Next: sp=Maturase K 1; Pinus yunnanensis (Yunnan pine). Plastid; Chloroplast. 0.0
• Sma3: Maturase K 1.495e-27
Internal
sp_v3.0_unigene64716 SustainPine v3.0 239
• AutoFact: CRS2-associated factor 2 [Arabidopsis thaliana] sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName: Full=Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2; Flags: Precursor gb|AAF79596.1|AC007 8.0e-22
• FL-Next: sp=CRS2-associated factor 2, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Chloroplastic group IIA intron splicing facilitator CRS2-associated factor 2 1.336e-12
Internal
sp_v3.0_unigene64994 SustainPine v3.0 242
• AutoFact: RecName: Full=Probable cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=CPSF 160 kDa subunit emb|CAD39979.2| OSJNBa0032B23.5 [Oryza sativa Japonica Group] 3.0e-17
• FL-Next: sp=Probable cleavage and polyadenylation specificity factor subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 5.586e-10
Internal
sp_v3.0_unigene65243 SustainPine v3.0 184
• AutoFact: RecName: Full=Probable cleavage and polyadenylation specificity factor subunit 1; AltName: Full=Cleavage and polyadenylation specificity factor 160 kDa subunit; Short=CPSF 160 kDa subunit emb|CAD39979.2| OSJNBa0032B23.5 [Oryza sativa Japonica Group] 2.0e-05
• FL-Next: sp=Probable cleavage and polyadenylation specificity factor subunit 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Probable cleavage and polyadenylation specificity factor subunit 1 7.852e-10
Internal
sp_v3.0_unigene65831 SustainPine v3.0 268
• AutoFact: putative protein kinase (AME2/AFC1) [Oryza sativa Japonica Group] 1.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Afc, putative 9.011e-12
C-terminus
sp_v3.0_unigene66603 SustainPine v3.0 231
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana] emb|CAB77760.1| hypothetical protein 5.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 8.568e-11
Internal
sp_v3.0_unigene67351 SustainPine v3.0 314
• AutoFact: 5'-3' exoribonuclease 3 [Arabidopsis thaliana] sp|Q9FQ03.1|XRN3_ARATH RecName: Full=5'-3' exoribonuclease 3; AltName: Full=Protein EXORIBONUCLEASE 3 gb|AAG40732.1|AF286719_1 XRN3 [Arabidopsis thaliana] gb|AEE35742.1| 5'-3' exoribonuclease 3 [Arabidopsis t 2.0e-19
• FL-Next: sp=5'-3' exoribonuclease 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: 5'->3' exoribonuclease, putative 1.06e-11
Internal
sp_v3.0_unigene68648 SustainPine v3.0 239
• AutoFact: putative nucleic acid-binding protein [Oryza sativa Japonica Group] gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group] dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group] 3.0e-23
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribonucleoprotein 8.677e-15
Putative C-terminus
sp_v3.0_unigene68995 SustainPine v3.0 269
• AutoFact: putative U2 snRNP auxiliary factor [Chenopodium rubrum] 9.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: U2 snrnp auxiliary factor, small subunit, putative 1.917e-11
Internal
sp_v3.0_unigene69631 SustainPine v3.0 164
• AutoFact: putative 5-3 exoribonuclease [Oryza sativa Japonica Group] 8.0e-12
• FL-Next: Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 0.0
Internal
sp_v3.0_unigene70549 SustainPine v3.0 242
• AutoFact: nucleic acid-binding protein-like [Oryza sativa Japonica Group] 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribonucleoprotein 9.835e-14
Putative C-terminus
sp_v3.0_unigene72197 SustainPine v3.0 312
• AutoFact: Splicing factor u2af large subunit, putative n=1 Tax=Ricinus communis RepID=B9SGJ4_RICCO 6.0e-22
• FL-Next: sp=Splicing factor U2af large subunit B; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: U2 snRNP auxiliary factor large subunit B 8.32e-16
Internal
sp_v3.0_unigene73514 SustainPine v3.0 249
• AutoFact: spliceosome associated protein-like [Arabidopsis thaliana] emb|CAB81273.1| spliceosome associated protein-like [Arabidopsis thaliana] 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene73970 SustainPine v3.0 294
• AutoFact: PREDICTED: similar to helicase domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001985AA9 9.00054e-42
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 4.276e-18
Internal
sp_v3.0_unigene74596 SustainPine v3.0 334
• AutoFact: arginine/serine rich splicing factor sf4/14, putative; K13096 splicing factor 4 8.0e-27
• FL-Next: sp=SURP and G-patch domain-containing protein 1-like protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Splicing factor 4-like protein 1.696e-09
Internal
sp_v3.0_unigene74828 SustainPine v3.0 262
• AutoFact: CMGC/CDK/CRK7 protein kinase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=D6RMW6_COPC7 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CDKC 3.711e-18
Internal
sp_v3.0_unigene75005 SustainPine v3.0 196
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ATP-dependent RNA helicase, putative 1.161e-18
N-terminus
sp_v3.0_unigene75419 SustainPine v3.0 349
• AutoFact: polypyrimidine track-binding protein homologue [Cicer arietinum] 2.0e-09
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene75479 SustainPine v3.0 155
• AutoFact: putative polypyrimidine track-binding protein [Oryza sativa Japonica Group] 1.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene75568 SustainPine v3.0 194
• AutoFact: putative pre-mRNA-splicing factor ATP-dependent RNA helicase [Arabidopsis thaliana] sp|O22899.1|DHX15_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase gb|AAB63825.1| putative pre-mRNA splicing factor RNA helicase [Arabidops 2.0e-18
• FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: ATP-dependent RNA helicase, putative 2.12e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain