Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA-directed RNA polymerase.

Term: EC:2.7.7.6  Help

Source: EC from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene124869 SustainPine v3.0 194
• AutoFact: DNA-directed RNA polymerase 1B, mitochondrial n=3 Tax=Nicotiana RepID=RPO1B_TOBAC 7.0e-21
• FL-Next: sp=DNA-directed RNA polymerase 1B, mitochondrial; Nicotiana tabacum (Common tobacco). 0.0
• Sma3: DNA-directed RNA polymerase 4.408e-19
Internal
sp_v3.0_unigene128420 SustainPine v3.0 384
• AutoFact: PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1 2.0e-07
• Sma3: DNA-directed RNA polymerase 5.695e-18
coding
sp_v3.0_unigene129484 SustainPine v3.0 449
• AutoFact: DUF1421 multi-domain protein 7.0e-09
• Sma3: DNA-directed RNA polymerase 4.786e-19
unknown
sp_v3.0_unigene131755 SustainPine v3.0 187
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TA90_VITVI 4.0e-15
• FL-Next: sp=DNA-directed RNA polymerase 1B, mitochondrial; Nicotiana tabacum (Common tobacco). 0.0
• Sma3: DNA-directed RNA polymerase 6.566e-26
Internal
sp_v3.0_unigene139592 SustainPine v3.0 350
• AutoFact: DNA-directed RNA polymerase (Fragment) n=2 Tax=Spermatophyta RepID=E0CQW1_VITVI 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 0.0
Internal
sp_v3.0_unigene141255 SustainPine v3.0 348
• AutoFact: DNA-directed RNA polymerase n=3 Tax=Magnoliophyta RepID=B9FZ51_ORYSJ 2.0e-27
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 5.553e-12
Internal
sp_v3.0_unigene148289 SustainPine v3.0 377
• AutoFact: DNA-directed RNA polymerase n=6 Tax=core eudicotyledons RepID=B9SXC0_RICCO 0.0
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 9.526e-27
Internal
sp_v3.0_unigene150852 SustainPine v3.0 419
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 8.757e-34
Complete
sp_v3.0_unigene151015 SustainPine v3.0 393
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 1.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 1.699e-31
Complete
sp_v3.0_unigene153956 SustainPine v3.0 434
• AutoFact: DNA-directed RNA polymerase subunit beta n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE1_HALO1 0.0
• FL-Next: sp=DNA-directed RNA polymerase subunit beta; Cephalotaxus wilsoniana. Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase subunit beta 0.0
Internal
sp_v3.0_unigene154287 SustainPine v3.0 436
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus RepID=D7G075_ECTSI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 3.21e-32
Complete
sp_v3.0_unigene154754 SustainPine v3.0 436
• AutoFact: PREDICTED: DNA-directed RNA polymerase III B-like n=1 Tax=Rattus norvegicus RepID=UPI0001CF3F5E 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 6.549e-30
N-terminus
sp_v3.0_unigene155384 SustainPine v3.0 247
• AutoFact: DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena thermophila] gb|EAR82894.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena thermophila SB210] 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 7.765e-15
Putative N-terminus
sp_v3.0_unigene157504 SustainPine v3.0 252
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Acanthamoeba castellanii RepID=Q0QFR1_ACACA 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA-directed RNA polymerase 1.16e-07
C-terminus
sp_v3.0_unigene157692 SustainPine v3.0 319
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Branchiostoma floridae RepID=C3ZBW5_BRAFL 7.0e-32
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 1.956e-07
Internal
sp_v3.0_unigene158048 SustainPine v3.0 435
• AutoFact: DNA-directed RNA polymerase n=1 Tax=Thauera sp. MZ1T RepID=C4KC58_THASP 1.4013e-45
• FL-Next: sp=DNA-directed RNA polymerase subunit beta''; Pinus brutia. Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase subunit beta'' 0.0
Putative C-terminus
sp_v3.0_unigene159192 SustainPine v3.0 175
• AutoFact: DNA-directed RNA polymerase subunit beta' n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUG7_CHIPD 6.0e-24
• FL-Next: sp=DNA-directed RNA polymerase; Abies firma (Momi fir). Plastid; Chloroplast. 0.0
• Sma3: DNA-directed RNA polymerase subunit beta' 0.0
Internal
sp_v3.0_unigene162932 SustainPine v3.0 333
• AutoFact: DNA-directed RNA polymerase n=2 Tax=Selaginella moellendorffii RepID=D8SQN3_SELML 1.4013e-45
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 2.96e-18
Internal
sp_v3.0_unigene163706 SustainPine v3.0 328
• AutoFact: DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI 6.0e-17
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA-directed RNA polymerase 4.948e-18
Internal
sp_v3.0_unigene165202 SustainPine v3.0 160
• AutoFact: DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI 3.0e-18
• FL-Next: sp=DNA-directed RNA polymerase II subunit RPB2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: DNA-directed RNA polymerase 7.894e-26
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain