Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: root development

Term: GO:0048364  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene12492 SustainPine v3.0 966
AutoFact: ubiquitin carboxyl-terminal hydrolase 17 [Arabidopsis thaliana] sp|Q9FKP5.1|UBP17_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 17; AltName: Full=Deubiquitinating enzyme 17; Short=AtUBP17; AltName: Full=Ubiquitin thiolesterase 17; AltName: Ful 2.0e-11
FL-Next: Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana GN=UBP17 0.0
Putative N-terminus
sp_v3.0_unigene12628 SustainPine v3.0 456
AutoFact: APETALA2-like protein 1 n=1 Tax=Pinus thunbergii RepID=Q76H95_PINTH 0.0
FL-Next: tr=APETALA2-like protein 1; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: AP2 domain-containing transcription factor 2.741e-32
Internal
sp_v3.0_unigene12908 SustainPine v3.0 1656
AutoFact: Cycloartenol synthase n=2 Tax=Pinaceae RepID=Q9FQM1_ABIMA 0.0
FL-Next: tr=Cycloartenol synthase; Abies magnifica (Red fir). 0.0
Sma3: Cycloartenol synthase 0.0
C-terminus
sp_v3.0_unigene13003 SustainPine v3.0 580
AutoFact: Homeobox 1 n=1 Tax=Picea abies RepID=Q9FR59_PICAB 0.0
FL-Next: tr=Homeobox 1; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Homeobox protein, putative 3.409e-15
Internal
sp_v3.0_unigene13109 SustainPine v3.0 2951
AutoFact: Lipoxygenase n=1 Tax=Ricinus communis RepID=B9RSQ2_RICCO 0.0
FL-Next: sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis). 0.0
Sma3: Lipoxygenase 0.0
C-terminus
sp_v3.0_unigene13523 SustainPine v3.0 1259
AutoFact: Cation-transporting ATPase CA1 n=1 Tax=Dunaliella bioculata RepID=ATC1_DUNBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Endoplasmic reticulum [ER]-type calcium ATPase 1.053e-15
Internal
sp_v3.0_unigene13963 SustainPine v3.0 1166
AutoFact: Putative auxin response factor 6 n=1 Tax=Amborella trichopoda RepID=E0WD84_AMBTC 0.0
FL-Next: tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine). 0.0
Sma3: Auxin response factor, putative 3.37601e-41
Misassembled
sp_v3.0_unigene14347 SustainPine v3.0 389
AutoFact: Casein kinase n=1 Tax=Beta vulgaris RepID=A2I5G0_BETVU 1.4013e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative casein kinase I 1.995e-21
N-terminus
sp_v3.0_unigene14502 SustainPine v3.0 2304
AutoFact: GTP-binding protein alpha subunit, gna, putative n=1 Tax=Ricinus communis RepID=B9S8Q3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: GTP-binding protein alpha subunit, gna, putative 2.329e-16
Complete
sp_v3.0_unigene14570 SustainPine v3.0 2844
AutoFact: Aminophospholipid ATPase (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I2N3_POPTR 0.0
FL-Next: sp=Putative phospholipid-transporting ATPase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Phospholipid-transporting ATPase, putative 5.71e-21
Putative C-terminus
sp_v3.0_unigene14948 SustainPine v3.0 2177
AutoFact: Homeodomain protein HB2 n=1 Tax=Picea abies RepID=Q8S555_PICAB 0.0
FL-Next: tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Homeobox protein, putative 9.212e-13
C-terminus
sp_v3.0_unigene16172 SustainPine v3.0 410
AutoFact: putative AP2 domain transcription factor [Arabidopsis thaliana] 2.0e-11
FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: AP2 domain-containing transcription factor 1.192e-38
Internal
sp_v3.0_unigene16643 SustainPine v3.0 520
AutoFact: Phospholipase d zeta, putative n=1 Tax=Ricinus communis RepID=B9RTA5_RICCO 0.0
FL-Next: sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Phospholipase d zeta, putative 6.195e-09
Internal
sp_v3.0_unigene16702 SustainPine v3.0 576
AutoFact: phospholipid-transporting ATPase 3 [Arabidopsis thaliana] sp|Q9XIE6.2|ALA3_ARATH RecName: Full=Phospholipid-transporting ATPase 3; Short=AtALA3; AltName: Full=Aminophospholipid ATPase 3; AltName: Full=Aminophospholipid flippase 3; AltName: Full=Protein IR 0.0
FL-Next: sp=Phospholipid-transporting ATPase 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Aminophospholipid ATPase 1.056e-21
Internal
sp_v3.0_unigene17698 SustainPine v3.0 960
AutoFact: auxin-responsive protein IAA13 [Arabidopsis thaliana] ref|NP_001118434.1| auxin-responsive protein IAA13 [Arabidopsis thaliana] gb|AAG48763.1|AF332399_1 auxin-regulated protein IAA13 [Arabidopsis thaliana] gb|AAC49054.1| IAA13 [Arabidopsis thaliana] gb|AA 2.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Aux/IAA protein 1.312e-16
C-terminus
sp_v3.0_unigene17965 SustainPine v3.0 1898
AutoFact: auxin-responsive protein IAA13 [Arabidopsis thaliana] sp|Q38831.2|IAA13_ARATH RecName: Full=Auxin-responsive protein IAA13; AltName: Full=Indoleacetic acid-induced protein 13 gb|AAO64809.1| At2g33310 [Arabidopsis thaliana] dbj|BAE99393.1| auxin regulated 2.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Aux/IAA protein 3.415e-08
Complete
sp_v3.0_unigene18345 SustainPine v3.0 2215
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SIX2_RICCO 0.0
FL-Next: sp=Auxin transport protein BIG; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene18678 SustainPine v3.0 989
AutoFact: Lipoxygenase n=2 Tax=Populus trichocarpa RepID=B9HJW6_POPTR 0.0
FL-Next: sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis). 0.0
Sma3: Lipoxygenase 0.0
Internal
sp_v3.0_unigene18694 SustainPine v3.0 711
AutoFact: Auxin efflux facilitator SlPIN1 n=1 Tax=Solanum lycopersicum RepID=E5KGD0_SOLLC 9.99967e-42
FL-Next: tr=PIN-like auxin efflux carrier; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Auxin efflux carrier component 1.93379e-43
C-terminus
sp_v3.0_unigene18825 SustainPine v3.0 3917
AutoFact: AP2 domain-containing transcription factor n=1 Tax=Populus trichocarpa RepID=B9HHX9_POPTR 0.0
FL-Next: tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana). 0.0
Sma3: AP2 domain-containing transcription factor 0.0
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain