Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: nucleolus

Term: GO:0005730  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene4782 SustainPine v3.0 315
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06430, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2750; Flags: Precursor gb|AAF08573.1|AC01 9.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene4819 SustainPine v3.0 798
AutoFact: Histone H4 n=1 Tax=Ostreococcus tauri RepID=Q01FF9_OSTTA 5.0e-36
FL-Next: sp=Histone H4; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene4872 SustainPine v3.0 752
AutoFact: Histone H2B n=2 Tax=Picea sitchensis RepID=A9NZJ5_PICSI 5.99756e-43
FL-Next: sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.331e-35
C-terminus
sp_v3.0_unigene4897 SustainPine v3.0 296
AutoFact: 40S ribosomal protein S7-like protein n=1 Tax=Solanum tuberosum RepID=Q3HRX6_SOLTU 3.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S7 5.196e-26
C-terminus
sp_v3.0_unigene4898 SustainPine v3.0 588
AutoFact: Ribosomal protein L4/L1 n=3 Tax=Agaricomycetes RepID=A8N1B9_COPC7 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S16 1.955e-36
Complete
sp_v3.0_unigene4909 SustainPine v3.0 362
AutoFact: Glycoprotein-like protein n=2 Tax=core eudicotyledons RepID=Q3HVK7_SOLTU 5.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60 ribosomal protein L14 1.95e-12
Putative N-terminus
sp_v3.0_unigene4916 SustainPine v3.0 841
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.649e-08
Putative Complete
sp_v3.0_unigene5003 SustainPine v3.0 225
AutoFact: Ubiquitin [Medicago truncatula] 2.0e-26
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Ubiquitin, putative 1.139e-10
Putative Complete
sp_v3.0_unigene5045 SustainPine v3.0 3143
AutoFact: NAC domain containing protein 28 [Arabidopsis thaliana] gb|AAF06052.1|AC009513_8 Contains similarity to gb|AF123310 NAC domain protein NAM gene from Arabidopsis thaliana gb|AEE34440.1| NAC domain containing protein 28 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: NAC domain protein, IPR003441 0.0
Putative Complete
sp_v3.0_unigene5142 SustainPine v3.0 1232
AutoFact: Chaperone protein htpG family protein [Arabidopsis thaliana] gb|AAL32008.1|AF436826_1 At2g04030/F3C11.14 [Arabidopsis thaliana] gb|AAD32922.1| putative heat shock protein [Arabidopsis thaliana] gb|AAK96633.1| At2g04030/F3C11.14 [Arabidopsis thaliana] gb|A 0.0
FL-Next: tr=GRP94; Pinus taeda (Loblolly pine). 0.0
Sma3: Heat shock protein 90 0.0
Putative N-terminus
sp_v3.0_unigene5151 SustainPine v3.0 851
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 1.0e-20
FL-Next: tr=Polyubiquitin; Pinus sylvestris (Scots pine). 0.0
Sma3: Polyubiquitin 2.115e-06
Putative N-terminus
sp_v3.0_unigene5293 SustainPine v3.0 2584
AutoFact: serine/threonine protein phosphatase 2A regulatory subunit B prime beta isoform [Arabidopsis thaliana] sp|O04376.1|2A5B_ARATH RecName: Full=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Short=AtB' beta; Short=PP2A, B' 0.0
FL-Next: sp=Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein phosphatase 2a, regulatory subunit, putative 1.322e-21
Complete
sp_v3.0_unigene5315 SustainPine v3.0 2262
AutoFact: transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] gb|AAC63653.1| unknown protein [Arabidopsis thaliana] gb|AAM15129.1| unknown protein [Arabidopsis thaliana] gb|AEC10921.1| transducin family protein / WD-40 repeat family prote 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene5324 SustainPine v3.0 2137
AutoFact: RecName: Full=Importin subunit alpha; AltName: Full=Karyopherin subunit alpha; Short=KAP alpha gb|AAC23722.1| importin alpha [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin alpha, putative 8.841e-18
Complete
sp_v3.0_unigene5937 SustainPine v3.0 2086
AutoFact: pfam04427, Brix, Brix domain 1.0e-34
FL-Next: sp=Ribosome production factor 2 homolog; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Brix domain-containing protein 1 homolog 8.693e-10
Complete
sp_v3.0_unigene6263 SustainPine v3.0 2454
AutoFact: RecName: Full=Formin-like protein 1; AltName: Full=OsFH1; Flags: Precursor dbj|BAB86073.1| putative FH protein NFH2 [Oryza sativa Japonica Group] dbj|BAC06896.1| putative FH protein NFH2 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Formin-like protein 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Formin-like protein 11 5.347e-08
C-terminus
sp_v3.0_unigene6273 SustainPine v3.0 2140
AutoFact: putative RNA helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene6274 SustainPine v3.0 1545
AutoFact: 70 kDa heat shock protein n=5 Tax=BEP clade RepID=Q10SR3_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Heat shock protein 70 0.0
C-terminus
sp_v3.0_unigene6367 SustainPine v3.0 2712
AutoFact: ATP-dependent RNA helicase DHX8/PRP22 [Arabidopsis thaliana] sp|Q38953.2|DHX8_ARATH RecName: Full=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase dbj|BAB01838.1| pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Arabidopsis th 0.0
FL-Next: sp=Probable pre-mRNA-splicing factor ATP-dependent RNA helicase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: ATP-dependent RNA helicase, putative 1.56e-40
N-terminus
sp_v3.0_unigene6370 SustainPine v3.0 2418
AutoFact: protease Do-like 2 [Arabidopsis thaliana] sp|O82261.2|DEGP2_ARATH RecName: Full=Protease Do-like 2, chloroplastic; Flags: Precursor gb|AAG41447.1|AF326865_1 putative DegP2 protease [Arabidopsis thaliana] gb|AAK14061.1|AF245171_1 DegP2 protease [Arabidopsi 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine endopeptidase degp2, putative 2.995e-19
Complete

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain