Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleolus

Term: GO:0005730  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene18726 SustainPine v3.0 1007
AutoFact: Tymo_45kd_70kd multi-domain protein 1.0e-10
Sma3: Putative arginine/serine-rich protein 3.506e-09
coding
sp_v3.0_unigene18727 SustainPine v3.0 642
AutoFact: Histone H2B.4 n=7 Tax=Arabidopsis RepID=H2B4_ARATH 9.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H2B 1.364e-35
C-terminus
sp_v3.0_unigene18784 SustainPine v3.0 349
AutoFact: histone H4 [Hyacinthus orientalis] 2.0e-30
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 1.194e-11
Putative Complete
sp_v3.0_unigene18809 SustainPine v3.0 432
Sma3: 60S ribosomal protein L12 4.249e-08
putative_coding
sp_v3.0_unigene18822 SustainPine v3.0 1128
AutoFact: 40S ribosomal protein S6 n=7 Tax=Spermatophyta RepID=RS6_ASPOF 0.0
FL-Next: sp=40S ribosomal protein S6; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S6 4.497e-19
Complete
sp_v3.0_unigene18960 SustainPine v3.0 437
AutoFact: AP2 domain class transcription factor n=1 Tax=Malus x domestica RepID=D5L125_MALDO 9.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: AP2/ERF domain-containing transcription factor 0.0
Internal
sp_v3.0_unigene19088 SustainPine v3.0 2790
AutoFact: protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana] ref|NP_849390.1| protein phosphatase 2 (formerly 2A), regulatory subunit B' [Arabidopsis thaliana] sp|Q8RW96.2|2A5G_ARATH RecName: Full=Serine/threonine protein phosphatase 0.0
FL-Next: sp=Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Protein phosphatase 2a, regulatory subunit, putative 1.168e-21
Complete
sp_v3.0_unigene19093 SustainPine v3.0 618
AutoFact: protein phosphatase 2C 57 [Arabidopsis thaliana] sp|P49599.2|P2C57_ARATH RecName: Full=Protein phosphatase 2C 57; Short=AtPP2C57; AltName: Full=Protein phosphatase 2C PPH1; Short=PP2C PPH1 emb|CAB81429.1| protein phosphatase homolog (PPH1) [Arabidopsis th 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene19262 SustainPine v3.0 385
AutoFact: 40S ribosomal protein S25 (Fragment) n=2 Tax=core eudicotyledons RepID=Q6VEV1_SOYBN 1.0e-10
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S25 3.707e-12
Putative Complete
sp_v3.0_unigene19339 SustainPine v3.0 1904
AutoFact: protein serine/arginine-rich 22 [Arabidopsis thaliana] ref|NP_001078474.1| protein serine/arginine-rich 22 [Arabidopsis thaliana] emb|CAA19765.1| RSZp22 splicing factor [Arabidopsis thaliana] gb|AAD12769.1| 9G8-like SR protein [Arabidopsis thaliana] emb|C 4.0e-27
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Splicing factor, arginine/serine-rich 7 8.677e-15
Complete
sp_v3.0_unigene19581 SustainPine v3.0 198
AutoFact: 40S ribosomal protein S1 n=4 Tax=Agaricales RepID=RS3A_COPC7 5.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 40S ribosomal protein S3a 7.492e-21
Internal
sp_v3.0_unigene19996 SustainPine v3.0 773
AutoFact: Histone H2B.10 n=5 Tax=Arabidopsis RepID=H2B10_ARATH 9.99967e-42
FL-Next: tr=Putative histone H4; Pinus pinaster (Maritime pine). 0.0
Sma3: Histone H2B 7.465e-36
C-terminus
sp_v3.0_unigene20022 SustainPine v3.0 449
AutoFact: Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Putative Complete
sp_v3.0_unigene20056 SustainPine v3.0 2753
AutoFact: Dead box ATP-dependent RNA helicase, putative n=1 Tax=Ricinus communis RepID=B9SAD3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene20072 SustainPine v3.0 2881
AutoFact: Zn finger protein [Nicotiana tabacum] 2.0e-33
FL-Next: tr=Dof transcription factor; Pinus pinaster (Maritime pine). 0.0
Sma3: F-box family protein 4.2039e-45
Putative Complete
sp_v3.0_unigene20143 SustainPine v3.0 2267
AutoFact: transcription factor (E2F) [Chenopodium rubrum] 0.0
FL-Next: tr=E2F-like protein; Pinus sylvestris (Scots pine). 0.0
Sma3: Transcription factor E2F 9.041e-21
Complete
sp_v3.0_unigene20146 SustainPine v3.0 1067
AutoFact: polyubiquitin [Triticum aestivum] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.882e-08
Complete
sp_v3.0_unigene20194 SustainPine v3.0 1366
AutoFact: Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH 0.0
FL-Next: sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Bi-ubiquitin 1.764e-08
Complete
sp_v3.0_unigene20312 SustainPine v3.0 946
AutoFact: ubiquitin [Antirrhinum majus] 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.79e-08
Putative Complete
sp_v3.0_unigene20331 SustainPine v3.0 1208
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain