Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nucleolus

Term: GO:0005730  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene77 SustainPine v3.0 1222
AutoFact: Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH 0.0
FL-Next: tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa). 0.0
Sma3: Bi-ubiquitin 1.699e-08
Putative Complete
sp_v3.0_unigene86 SustainPine v3.0 2927
AutoFact: U3-55K-like protein 2 [Arabidopsis thaliana] gb|AAY21208.1| U3-55K-like protein 2 [Arabidopsis thaliana] gb|AEE84406.1| U3-55K-like protein 2 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: U3 snoRNP-associated-like protein 5.308e-09
Complete
sp_v3.0_unigene88 SustainPine v3.0 1025
AutoFact: Putative histone H1 n=1 Tax=Cryptomeria japonica RepID=Q1XG59_CRYJA 4.0e-26
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H1 0.0
Complete
sp_v3.0_unigene106 SustainPine v3.0 1490
AutoFact: transcription factor TF2 [Gossypium hirsutum] 2.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Transcription factor GT-3b 1.158e-08
Complete
sp_v3.0_unigene108 SustainPine v3.0 3024
AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative ATP-dependent RNA helicase 1.657e-06
Putative Complete
sp_v3.0_unigene138 SustainPine v3.0 3993
AutoFact: putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana] 0.0
FL-Next: sp=RNA-dependent RNA polymerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: RNA-directed RNA polymerase 3.257e-20
Complete
sp_v3.0_unigene195 SustainPine v3.0 3806
AutoFact: RNA recognition motif-containing protein [Arabidopsis thaliana] ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana] gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana] gb|AAM65738.1| RNA binding protein, putativ 8.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Glycine-rich RNA-binding protein 2.597e-27
Complete
sp_v3.0_unigene347 SustainPine v3.0 2382
AutoFact: RPA 70kDa subunit [Pisum sativum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: 60S ribosomal protein L35 4.857e-18
Complete
sp_v3.0_unigene403 SustainPine v3.0 1855
AutoFact: DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dead box ATP-dependent RNA helicase, putative 4.649e-12
Putative Complete
sp_v3.0_unigene458 SustainPine v3.0 3188
AutoFact: RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_VIGRR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 7 2.235e-11
Putative Complete
sp_v3.0_unigene563 SustainPine v3.0 2759
AutoFact: Serine/threonine-protein phosphatase (Fragment) n=5 Tax=Magnoliophyta RepID=D7T1Q5_VITVI 0.0
FL-Next: sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine protein phosphatase 0.0
Complete
sp_v3.0_unigene835 SustainPine v3.0 731
AutoFact: histone H4 [Hyacinthus orientalis] 4.0e-38
FL-Next: sp=Histone H4; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Histone H4 1.194e-11
Complete
sp_v3.0_unigene1064 SustainPine v3.0 1234
AutoFact: DUF623 domain containing protein 3.0e-20
FL-Next: tr=Uncharacterized protein; Brachypodium distachyon (Purple false brome) (Trachynia distachya). 0.0
Putative Complete
sp_v3.0_unigene1302 SustainPine v3.0 2728
AutoFact: Nucleoporin interacting component; Protein prenyltransferase [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1314 SustainPine v3.0 2126
AutoFact: RecName: Full=Formin-like protein 1; AltName: Full=OsFH1; Flags: Precursor dbj|BAB86073.1| putative FH protein NFH2 [Oryza sativa Japonica Group] dbj|BAC06896.1| putative FH protein NFH2 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Formin-like protein 1; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Actin binding protein, putative 1.462e-09
C-terminus
sp_v3.0_unigene1364 SustainPine v3.0 3881
AutoFact: U3 small nucleolar RNA-associated protein, putative n=1 Tax=Ricinus communis RepID=B9S245_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene1475 SustainPine v3.0 2215
AutoFact: phosphatase like protein [Arabidopsis thaliana] emb|CAB78583.1| phosphatase like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Protein phosphatase 2a, regulatory subunit, putative 9.176e-22
Complete
sp_v3.0_unigene1501 SustainPine v3.0 904
AutoFact: Putative glycine-rich protein n=1 Tax=Picea glauca RepID=Q3HRT2_PICGL 2.0e-31
FL-Next: tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Cold-shock protein with RNA binding domain 4.18e-08
Putative Complete
sp_v3.0_unigene1531 SustainPine v3.0 1548
AutoFact: FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 7.448e-13
Complete
sp_v3.0_unigene1548 SustainPine v3.0 1829
AutoFact: pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 3.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain