Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonuclease H activity

Term: GO:0004523  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene68075 SustainPine v3.0 301
• AutoFact: RVT_1 domain containing protein 4.0e-08
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene69905 SustainPine v3.0 296
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 3.0e-22
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 8.513e-18
N-terminus
sp_v3.0_unigene70033 SustainPine v3.0 424
• AutoFact: Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA48_ASPOF 6.0e-36
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 3.873e-10
N-terminus
sp_v3.0_unigene70273 SustainPine v3.0 266
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 7.0e-20
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene71011 SustainPine v3.0 276
• AutoFact: retrotransposon protein [Beta vulgaris] 4.0e-16
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
N-terminus
sp_v3.0_unigene71351 SustainPine v3.0 317
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QS58_ORYSJ 3.0e-11
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene72537 SustainPine v3.0 167
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZE5_ORYSJ 6.0e-11
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene80920 SustainPine v3.0 290
• AutoFact: Ribosomal protein L13a n=2 Tax=Chlamydomonadales RepID=A8IVU0_CHLRE 6.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L13a 2.222e-20
C-terminus
sp_v3.0_unigene93938 SustainPine v3.0 1931
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QVH8_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 5.117e-22
Putative Complete
sp_v3.0_unigene95317 SustainPine v3.0 560
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 2.0e-39
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.504e-22
Putative N-terminus
sp_v3.0_unigene104150 SustainPine v3.0 425
• AutoFact: ribosomal protein L16a [Coprinopsis cinerea okayama7#130] gb|EAU93058.1| ribosomal protein L16a [Coprinopsis cinerea okayama7#130] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 60S ribosomal protein L13a 1.725e-20
N-terminus
sp_v3.0_unigene105435 SustainPine v3.0 568
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 0.0
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.708e-19
Putative Complete
sp_v3.0_unigene107393 SustainPine v3.0 343
• AutoFact: Equilibrative nucleoside transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9INU8_POPTR 2.0e-28
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Equilibrative nucleoside transporter 4.97e-26
Internal
sp_v3.0_unigene110167 SustainPine v3.0 595
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QVH8_ORYSJ 3.0e-23
• FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene110866 SustainPine v3.0 461
• AutoFact: Retrotransposon protein, putative, unclassified n=16 Tax=Oryza RepID=Q2R0G5_ORYSJ 3.0e-36
• FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 0.0
Internal
sp_v3.0_unigene111692 SustainPine v3.0 221
• AutoFact: RNase H domain-containing protein n=3 Tax=Arabidopsis thaliana RepID=F4JEB4_ARATH 2.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclease, putative 1.399e-07
Internal
sp_v3.0_unigene111962 SustainPine v3.0 475
• AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 2.0e-32
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00750; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene121760 SustainPine v3.0 359
• AutoFact: Unassigned protein
• FL-Next: sp=Protein TONSOKU; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene122293 SustainPine v3.0 589
• AutoFact: putative RNase H [Arabidopsis thaliana] 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Nuclease, putative 1.551e-07
Putative C-terminus
sp_v3.0_unigene123606 SustainPine v3.0 435
• AutoFact: Putative gag-pol polyprotein, identical n=2 Tax=Solanum demissum RepID=Q5NRP4_SOLDE 2.0e-26
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 1.4013e-45
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain