Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ribonuclease H activity

Term: GO:0004523  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene55381 SustainPine v3.0 458
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QVH8_ORYSJ 3.0e-27
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 7.687e-06
Internal
sp_v3.0_unigene56833 SustainPine v3.0 431
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QUU8_ORYSJ 4.0e-29
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: OSIGBa0160I04.5 protein 6.335e-06
Internal
sp_v3.0_unigene57152 SustainPine v3.0 349
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 3.0e-26
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.233e-10
Internal
sp_v3.0_unigene58311 SustainPine v3.0 396
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 2.0e-31
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene59809 SustainPine v3.0 239
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q53MN2_ORYSJ 7.0e-08
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene60822 SustainPine v3.0 114
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q56GE2_GINBI 4.0e-11
• FL-Next: tr=F7F22.17, putative; Asparagus officinalis (Garden asparagus). 0.0
• Sma3: Reverse transcriptase 1.435e-06
Internal
sp_v3.0_unigene61227 SustainPine v3.0 237
• AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 2.0e-13
• FL-Next: tr=Probable integrase-common tobacco-related; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene62438 SustainPine v3.0 210
• AutoFact: Unassigned protein
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene62751 SustainPine v3.0 163
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q10SG2_ORYSJ 4.0e-12
• FL-Next: tr=Retrotransposon protein, putative, Ty3-gypsy subclass; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene63303 SustainPine v3.0 270
• AutoFact: OSJNBa0091D06.8 protein n=1 Tax=Oryza sativa RepID=Q7XU13_ORYSA 2.0e-10
• FL-Next: tr=Similar to Arabidopsis thaliana chromosome II BAC F26H6; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Similar to Arabidopsis thaliana chromosome II BAC F26H6 6.335e-06
Internal
sp_v3.0_unigene63773 SustainPine v3.0 273
• AutoFact: Pol (Fragment) n=1 Tax=Pisum sativum RepID=Q6WAY9_PEA 7.0e-20
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene64390 SustainPine v3.0 167
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 3.0e-17
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris subsp. vulgaris. 0.0
• Sma3: Putative non-LTR retroelement reverse transcriptase 9.752e-13
Internal
sp_v3.0_unigene64607 SustainPine v3.0 207
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H n=2 Tax=Medicago truncatula RepID=A2Q2J0_MEDTR 7.0e-13
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Internal
sp_v3.0_unigene65150 SustainPine v3.0 168
• AutoFact: OSJNBa0074B10.9 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q7XS91_ORYSJ 5.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.36819e-42
Putative C-terminus
sp_v3.0_unigene65994 SustainPine v3.0 344
• AutoFact: Polyprotein, putative n=1 Tax=Solanum demissum RepID=Q6L420_SOLDE 2.0e-20
• FL-Next: tr=Polyprotein, putative; Solanum demissum (Wild potato). 0.0
Internal
sp_v3.0_unigene66072 SustainPine v3.0 478
• AutoFact: Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR 2.0e-24
• FL-Next: tr=Integrase, catalytic region; Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene66274 SustainPine v3.0 217
• AutoFact: H0515C11.9 protein n=1 Tax=Oryza sativa RepID=Q01MI2_ORYSA 3.0e-17
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
N-terminus
sp_v3.0_unigene67079 SustainPine v3.0 273
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative Complete
sp_v3.0_unigene67229 SustainPine v3.0 293
• AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 6.0e-27
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 5.22e-09
Putative N-terminus
sp_v3.0_unigene67360 SustainPine v3.0 329
• AutoFact: Gag/pol polyprotein n=3 Tax=Pisum sativum RepID=Q6WAY3_PEA 7.0e-23
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain