Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: embryo development ending in seed dormancy

Term: GO:0009793  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene131074 SustainPine v3.0 466
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610 dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana] gb|AEE75843.1| pentatricope 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 5.198e-14
Putative Complete
sp_v3.0_unigene131168 SustainPine v3.0 381
• AutoFact: [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 7.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene131176 SustainPine v3.0 329
• AutoFact: putative pentatricopeptide repeat protein [Gossypium hirsutum] 5.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide (PPR) repeat-containing protein-like 3.315e-12
Internal
sp_v3.0_unigene131334 SustainPine v3.0 375
• AutoFact: Ring finger protein, putative n=1 Tax=Ricinus communis RepID=B9RT88_RICCO 3.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene131357 SustainPine v3.0 237
• AutoFact: PREDICTED: similar to Tetratricopeptide-like helical n=1 Tax=Vitis vinifera RepID=UPI0001984A05 9.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tetratricopeptide-like helical 2.973e-09
C-terminus
sp_v3.0_unigene131383 SustainPine v3.0 270
• AutoFact: putative GTP-binding protein [Oryza sativa Japonica Group] gb|ABF98531.1| Dynamin-related protein 1C, putative, expressed [Oryza sativa Japonica Group] dbj|BAH01687.1| unnamed protein product [Oryza sativa Japonica Group] gb|EEC76063.1| hypothetical prote 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Dynamin, putative 2.008e-24
Internal
sp_v3.0_unigene131469 SustainPine v3.0 375
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49170, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 2261; Flags: Precursor gb|AAW62962.1| emb 4.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 1.177e-11
N-terminus
sp_v3.0_unigene131500 SustainPine v3.0 653
• AutoFact: leucyl-tRNA synthetase [Arabidopsis thaliana] gb|AAD36946.1|AF069441_6 putative leucyl tRNA synthetase [Arabidopsis thaliana] emb|CAB77903.1| putative leucyl tRNA synthetase [Arabidopsis thaliana] gb|AAL84999.1| AT4g04350/T19B17_7 [Arabidopsis thaliana] g 0.0
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene131649 SustainPine v3.0 446
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 1.117e-17
C-terminus
sp_v3.0_unigene131665 SustainPine v3.0 309
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170 emb|CAB36791.1| putative protein [Arabidopsis thaliana] emb|CAB80034.1| putative protein [Arabid 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 7.251e-10
C-terminus
sp_v3.0_unigene131799 SustainPine v3.0 300
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative 8.563e-08
Putative C-terminus
sp_v3.0_unigene131824 SustainPine v3.0 534
• AutoFact: Os09g0327200 protein n=4 Tax=Oryza sativa RepID=Q0J2K9_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 2.741e-12
Internal
sp_v3.0_unigene131857 SustainPine v3.0 404
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170 emb|CAB36791.1| putative protein [Arabidopsis thaliana] emb|CAB80034.1| putative protein [Arabid 2.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide, putative, expressed 6.555e-08
C-terminus
sp_v3.0_unigene132008 SustainPine v3.0 453
• AutoFact: pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain 3.0e-05
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA binding protein, putative 2.067e-09
Complete
sp_v3.0_unigene132188 SustainPine v3.0 421
• AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_28.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CTU8_VITVI 2.0e-30
• FL-Next: sp=Reticuline oxidase; Papaver somniferum (Opium poppy). 0.0
• Sma3: Reticuline oxidase, putative 1.421e-15
Internal
sp_v3.0_unigene132245 SustainPine v3.0 496
• AutoFact: Delta 1-pyrroline-5-carboxylate synthetase, putative n=2 Tax=Euphorbiaceae RepID=B9SE11_RICCO 5.0e-28
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Delta-1-pyrroline-5-carboxylate synthetase 2.257e-30
C-terminus
sp_v3.0_unigene132301 SustainPine v3.0 343
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat protein 0.0
Putative C-terminus
sp_v3.0_unigene132465 SustainPine v3.0 487
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 4.467e-09
Internal
sp_v3.0_unigene132469 SustainPine v3.0 459
• AutoFact: CUL1 n=9 Tax=Poaceae RepID=Q5ZC88_ORYSJ 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene132480 SustainPine v3.0 321
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 1.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative pentatricopeptide (PPR) repeat-containing protein 2.266e-11
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain