Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-dependent DNA replication

Term: GO:0006278  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene165899 SustainPine v3.0 467
• AutoFact: putative LRR receptor-like serine/threonine-protein kinase [Arabidopsis thaliana] sp|C0LGG7.2|Y1534_ARATH RecName: Full=Probable LRR receptor-like serine/threonine-protein kinase At1g53420; Flags: Precursor gb|AEE32938.1| putative LRR receptor-like serine 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr19 scaffold_4, whole genome shotgun sequence 1.96e-13
Putative N-terminus
sp_v3.0_unigene165974 SustainPine v3.0 353
• AutoFact: Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH 5.0e-26
• FL-Next: tr=Gypsy/Ty-3 retroelement polyprotein; 69905-74404; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene166017 SustainPine v3.0 179
• AutoFact: Os03g0571900 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0DQQ2_ORYSJ 3.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Multidrug resistance pump, putative 1.011e-15
Internal
sp_v3.0_unigene166028 SustainPine v3.0 344
• AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9T428_RICCO 3.99931e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Kinase, putative 1.114e-33
Internal
sp_v3.0_unigene166042 SustainPine v3.0 351
• AutoFact: PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Gallus gallus] 3.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
N-terminus
sp_v3.0_unigene166089 SustainPine v3.0 371
• AutoFact: Chromo domain containing protein 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene166232 SustainPine v3.0 438
• AutoFact: U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] 3.00018e-42
• FL-Next: tr=Activating signal cointegrator 1 complex subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene166295 SustainPine v3.0 345
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-26
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
• Sma3: Pol protein integrase region 1.46001e-41
Internal
sp_v3.0_unigene166312 SustainPine v3.0 333
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 2.0e-30
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 5.983e-39
Internal
sp_v3.0_unigene166355 SustainPine v3.0 265
• AutoFact: Pol protein n=1 Tax=Cucumis melo subsp. melo RepID=Q84KB0_CUCME 5.0e-14
• FL-Next: tr=Pol protein; Cucumis melo subsp. melo. 0.0
Internal
sp_v3.0_unigene166361 SustainPine v3.0 328
• AutoFact: ADP-ribosylation factor n=1 Tax=Grosmannia clavigera kw1407 RepID=F0XIE8_GROCL 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ADP-ribosylation factor 6.77e-27
N-terminus
sp_v3.0_unigene166387 SustainPine v3.0 451
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZU8_ORYSJ 3.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Polyprotein, putative 1.953e-06
N-terminus
sp_v3.0_unigene166617 SustainPine v3.0 494
• AutoFact: Integrase core domain containing protein n=1 Tax=Asparagus officinalis RepID=Q2AA43_ASPOF 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Gag-Pol polyprotein 4.92e-11
C-terminus
sp_v3.0_unigene166626 SustainPine v3.0 193
• AutoFact: Putative polyprotein n=1 Tax=Zea mays RepID=Q8SA93_MAIZE 2.0e-18
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 7.858e-20
Putative C-terminus
sp_v3.0_unigene166715 SustainPine v3.0 308
• AutoFact: Dimer_Tnp_hAT domain containing protein 2.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: HAT family dimerisation domain containing protein 4.717e-12
Internal
sp_v3.0_unigene166841 SustainPine v3.0 210
• AutoFact: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RSB7_RICCO 6.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Emb|CAB83315.1 4.755e-09
Putative C-terminus
sp_v3.0_unigene166955 SustainPine v3.0 497
• AutoFact: pfam01423, LSM, LSM domain 3.0e-13
• FL-Next: tr=Glycine rich protein-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.145e-13
Complete
sp_v3.0_unigene166968 SustainPine v3.0 371
• AutoFact: putative MAP kinase kinase kinase [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Map3k delta-1 protein kinase, putative 3.907e-25
Internal
sp_v3.0_unigene166997 SustainPine v3.0 261
• AutoFact: Telomerase reverse transcriptase catalytic subunit n=5 Tax=Doryanthes excelsa RepID=D5MD96_9ASPA 3.0e-27
• FL-Next: sp=Telomerase reverse transcriptase; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Telomerase reverse transcriptase 2.982e-25
Internal
sp_v3.0_unigene167065 SustainPine v3.0 143
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Gossypium barbadense RepID=Q96421_GOSBA 1.0e-08
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 2.271e-36
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain