Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-dependent DNA replication

Term: GO:0006278  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene18162 SustainPine v3.0 1004
AutoFact: mate efflux domain-containing protein [Arabidopsis thaliana] emb|CAA66809.1| hypothetical protein [Arabidopsis thaliana] dbj|BAB01841.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15295.1| AT3g26590/MFE16_11 [Arabidopsis thaliana] gb|AAN73299.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Multidrug resistance pump, putative 0.0
Internal
sp_v3.0_unigene18324 SustainPine v3.0 961
AutoFact: putative zinc finger protein [Hyacinthus orientalis] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA-binding protein HEXBP 1.273e-08
Putative Complete
sp_v3.0_unigene18345 SustainPine v3.0 2215
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SIX2_RICCO 0.0
FL-Next: sp=Auxin transport protein BIG; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene18815 SustainPine v3.0 2155
AutoFact: S15/NS1, RNA-binding protein [Arabidopsis thaliana] gb|AAF82151.1|AC034256_15 Contains similarity to an unknown protein T21F11.5 gi|6730725 from Arabidopsis thaliana BAC T21F11 gb|AC018849 and contains a Ribosomal Protein S15 PF|00312 domain gb|AAK32782.1 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome undetermined scaffold_108, whole genome shotgun sequence 7.92e-09
Complete
sp_v3.0_unigene19296 SustainPine v3.0 247
AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Zinc finger, CCHC-type; Peptidase aspartic, active site; Retrotransposon gag protein n=1 Tax=Medicago truncatula RepID=Q2HW87_MEDTR 3.0e-07
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene19453 SustainPine v3.0 651
AutoFact: Kinase, putative n=1 Tax=Ricinus communis RepID=B9SDY6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative receptor-type protein kinase LRK1 2.051e-26
Internal
sp_v3.0_unigene19506 SustainPine v3.0 1657
AutoFact: Vacuolar protein sorting factor 4B-like n=4 Tax=Poaceae RepID=Q5QMP6_ORYSJ 0.0
FL-Next: tr=Katanin p60 ATPase-containing subunit, putative; Ricinus communis (Castor bean). 0.0
Sma3: Putative uncharacterized protein At2g45500 3.608e-07
Complete
sp_v3.0_unigene19687 SustainPine v3.0 337
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.37e-06
Internal
sp_v3.0_unigene19799 SustainPine v3.0 308
AutoFact: Unassigned protein 2.0e-19
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene20715 SustainPine v3.0 749
AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa RepID=Q10RT1_ORYSJ 0.0
FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Sma3: Putative retroelement 5.471e-17
Complete
sp_v3.0_unigene20748 SustainPine v3.0 1045
AutoFact: stachyose synthase [Stachys affinis] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Stachyose synthase 1.687e-24
Putative N-terminus
sp_v3.0_unigene21208 SustainPine v3.0 676
AutoFact: casein kinase I-like protein [Arabidopsis thaliana] gb|AEC07749.1| casein kinase I-like protein [Arabidopsis thaliana] 2.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Casein kinase, putative 3.837e-16
C-terminus
sp_v3.0_unigene21484 SustainPine v3.0 579
AutoFact: Ferritin n=1 Tax=Picea sitchensis RepID=C0PRI0_PICSI 0.0
FL-Next: sp=Ferritin; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ferritin 0.0
C-terminus
sp_v3.0_unigene21531 SustainPine v3.0 822
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 2.99878e-43
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene21766 SustainPine v3.0 517
AutoFact: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9SIX2_RICCO 0.0
FL-Next: sp=Auxin transport protein BIG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene21809 SustainPine v3.0 3583
AutoFact: guanine nucleotide-exchange-like protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Pattern formation protein EMB30; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Guanine nucleotide-exchange protein-like 1.122e-08
C-terminus
sp_v3.0_unigene21812 SustainPine v3.0 649
AutoFact: RVT_2 domain containing protein 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 8.371e-09
N-terminus
sp_v3.0_unigene21885 SustainPine v3.0 303
AutoFact: putative receptor-like protein kinase [Oryza sativa Japonica Group] gb|ABF99613.1| Protein kinase domain containing protein, expressed [Oryza sativa Japonica Group] gb|EAZ29106.1| hypothetical protein OsJ_13163 [Oryza sativa Japonica Group] 3.0e-36
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative receptor-type protein kinase LRK1 1.655e-26
Internal
sp_v3.0_unigene21964 SustainPine v3.0 2847
AutoFact: Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9T139_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Seed imbibition protein 7.762e-15
Complete
sp_v3.0_unigene21965 SustainPine v3.0 544
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20300, mitochondrial; Flags: Precursor gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical 4.00001e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain