Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-dependent DNA replication

Term: GO:0006278  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene14672 SustainPine v3.0 1280
• AutoFact: U520, putative n=2 Tax=rosids RepID=B9RY79_RICCO 0.0
• FL-Next: tr=U520, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene14691 SustainPine v3.0 815
• AutoFact: Zinc/iron transporter, putative n=1 Tax=Ricinus communis RepID=B9SP03_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ZIP transporter 1.192e-31
C-terminus
sp_v3.0_unigene14793 SustainPine v3.0 525
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene14896 SustainPine v3.0 293
• AutoFact: Reverse transcriptase (Fragment) n=2 Tax=Peperomia caperata RepID=Q56GE9_PEPCA 3.0e-32
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Reverse transcriptase 0.0
Putative N-terminus
sp_v3.0_unigene15331 SustainPine v3.0 2043
• AutoFact: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SLY7_RICCO 0.0
• FL-Next: tr=Catalytic, putative; Ricinus communis (Castor bean). 0.0
Complete
sp_v3.0_unigene15477 SustainPine v3.0 618
• AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 3.0e-30
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.637e-14
Putative Complete
sp_v3.0_unigene15707 SustainPine v3.0 1580
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 9.80909e-45
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Copia-type polyprotein 1.613e-10
C-terminus
sp_v3.0_unigene15767 SustainPine v3.0 1450
• AutoFact: [U] COG5143 Synaptobrevin/VAMP-like protein 2.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Vesicle-associated membrane protein, putative 2.959e-15
Complete
sp_v3.0_unigene15881 SustainPine v3.0 2243
• AutoFact: calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] ref|NP_001030908.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] emb|CAB94141.1| CaLB protein [Arabidopsis thaliana] gb|AAO42810.1| At3g61 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Plant synaptotagmin 1.666e-11
Putative Complete
sp_v3.0_unigene15903 SustainPine v3.0 1006
• AutoFact: LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana] gb|AAU15177.1| At1g76060 [Arabidopsis thaliana] gb|AEE35791.1| LYR family of Fe/S cluster biogenesis protein [Arabidopsis thaliana] 1.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene15965 SustainPine v3.0 1028
• AutoFact: Dimer_Tnp_hAT domain containing protein 1.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene15992 SustainPine v3.0 2325
• AutoFact: Wax2_C multi-domain protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_268, whole genome shotgun sequence 3.048e-20
Complete
sp_v3.0_unigene16314 SustainPine v3.0 532
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene16450 SustainPine v3.0 529
• AutoFact: Sphingoid long-chain bases kinase 1 [Arabidopsis thaliana] ref|NP_851065.1| Sphingoid long-chain bases kinase 1 [Arabidopsis thaliana] sp|Q9LRB0.1|LCBK1_ARATH RecName: Full=Sphingoid long-chain bases kinase 1; Short=AtLCBK1; Short=LCB kinase 1; AltName: F 9.0e-21
• FL-Next: sp=Sphingoid long-chain bases kinase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene16667 SustainPine v3.0 1923
• AutoFact: CTR1-like protein kinase n=1 Tax=Rosa hybrid cultivar RepID=Q93XL9_ROSHC 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Map3k delta-1 protein kinase, putative 2.054e-26
Complete
sp_v3.0_unigene16714 SustainPine v3.0 806
• AutoFact: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Arabidopsis thaliana] sp|Q67ZE1.2|HSDD2_ARATH RecName: Full=3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2; Short=At3BETAHSD/D2; AltName: Full=4alpha-carboxysterol-C3-dehydrogenase/C4 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 3-beta-hydroxysteroid dehydrogenase 7.95e-12
Internal
sp_v3.0_unigene16798 SustainPine v3.0 413
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 4.0e-26
• FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
Internal
sp_v3.0_unigene17515 SustainPine v3.0 1500
• AutoFact: Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9T062_RICCO 0.0
• FL-Next: sp=Tetraketide alpha-pyrone reductase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Cinnamoyl-CoA reductase 2.382e-23
Complete
sp_v3.0_unigene17614 SustainPine v3.0 1691
• AutoFact: Cinnamoyl-CoA reductase, putative n=1 Tax=Ricinus communis RepID=B9T062_RICCO 0.0
• FL-Next: sp=Tetraketide alpha-pyrone reductase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Cinnamoyl-CoA reductase 2.614e-23
Complete
sp_v3.0_unigene17907 SustainPine v3.0 2345
• AutoFact: Wax2_C multi-domain protein 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_268, whole genome shotgun sequence 4.331e-20
Complete

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain