Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-dependent DNA replication

Term: GO:0006278  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene192121 SustainPine v3.0 458
• AutoFact: PREDICTED: similar to GL19160 isoform 1 n=2 Tax=Ciona intestinalis RepID=UPI00006A5B0C 6.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Probable U6 snRNA-associated Sm-like protein LSm4 4.31e-13
Putative Complete
sp_v3.0_unigene192177 SustainPine v3.0 694
• AutoFact: polyprotein [Glycine max] 0.0
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Polyprotein 5.375e-10
Putative Complete
sp_v3.0_unigene193698 SustainPine v3.0 372
• AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 9.0e-18
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene193968 SustainPine v3.0 570
• AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 2.0e-39
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.18e-18
C-terminus
sp_v3.0_unigene194004 SustainPine v3.0 163
• AutoFact: Cytochrome b n=301 Tax=Magnoliophyta RepID=CYB_ARATH 8.0e-25
• FL-Next: sp=Cytochrome b6; Cathaya argyrophylla. Plastid; Chloroplast. 0.0
• Sma3: Cytochrome b 2.245e-15
Internal
sp_v3.0_unigene194161 SustainPine v3.0 633
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa Japonica Group RepID=Q2R4I0_ORYSJ 7.0e-28
• FL-Next: tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene194254 SustainPine v3.0 506
• AutoFact: PREDICTED: similar to retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Vitis vinifera RepID=UPI000198569A 1.00053e-42
• FL-Next: tr=Retrotransposon protein; Beta vulgaris (Sugar beet). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 6.18505e-41
Internal
sp_v3.0_unigene194879 SustainPine v3.0 420
• AutoFact: Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9R7N6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Multidrug resistance pump, putative 7.00649e-44
Internal
sp_v3.0_unigene195211 SustainPine v3.0 326
• AutoFact: Unassigned protein 1.0e-24
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene195459 SustainPine v3.0 262
• AutoFact: ubiquitin ligase protein cop1, putative (EC:1.3.1.74); K10143 E3 ubiquitin-protein ligase RFWD2 [EC:6.3.2.19] 4.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ubiquitin ligase protein cop1, putative 8.451e-11
Internal
sp_v3.0_unigene195550 SustainPine v3.0 467
• AutoFact: Os07g0434200 protein (Fragment) n=2 Tax=Oryza sativa RepID=Q0D6W3_ORYSJ 9.0e-29
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Putative pol polyprotein 1.977e-09
C-terminus
sp_v3.0_unigene195596 SustainPine v3.0 187
• AutoFact: cytochrome P450 [Pyrus communis] 5.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytochrome P450 3.205e-15
Internal
sp_v3.0_unigene195604 SustainPine v3.0 456
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 2.0e-31
• FL-Next: tr=Putative non-LTR retroelement reverse transcriptase; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Putative non-LTR retroelement reverse transcriptase 2.784e-06
Internal
sp_v3.0_unigene195762 SustainPine v3.0 413
• AutoFact: Sterol desaturase [Medicago truncatula] 5.0e-24
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome undetermined scaffold_268, whole genome shotgun sequence 8.507e-11
N-terminus
sp_v3.0_unigene195794 SustainPine v3.0 210
• AutoFact: putative glycerol 3-phosphate permease [Zea mays] 9.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative glycerol 3-phosphate permease 4.145e-13
Internal
sp_v3.0_unigene196145 SustainPine v3.0 323
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=2 Tax=Oryza sativa RepID=Q10GH3_ORYSJ 1.0e-27
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Internal
sp_v3.0_unigene196179 SustainPine v3.0 474
• AutoFact: OSJNBa0004L19.22 protein n=1 Tax=Oryza sativa RepID=Q5JPZ2_ORYSA 3.0e-20
• FL-Next: tr=Putative polyprotein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene196472 SustainPine v3.0 310
• AutoFact: Putative retrotransposon polyprotein n=1 Tax=Ipomoea batatas RepID=Q5MG92_IPOBA 3.0e-21
• FL-Next: tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus). 0.0
Internal
sp_v3.0_unigene196899 SustainPine v3.0 334
• AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 3.0e-27
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Pol protein integrase region 1.499e-13
Internal
sp_v3.0_unigene196922 SustainPine v3.0 332
• AutoFact: OSJNBa0091C12.6 protein n=2 Tax=Oryza sativa RepID=Q7XWS6_ORYSJ 2.0e-24
• FL-Next: tr=Putative uncharacterized protein; Beta vulgaris (Sugar beet). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain