Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-dependent DNA replication

Term: GO:0006278  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene185112 SustainPine v3.0 317
• AutoFact: Integrase (Fragment) n=1 Tax=Gossypium herbaceum RepID=Q7XYU4_GOSHE 4.0e-25
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 5.085e-09
Internal
sp_v3.0_unigene185359 SustainPine v3.0 599
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.416e-08
Internal
sp_v3.0_unigene185368 SustainPine v3.0 470
• AutoFact: Exostosin-like [Medicago truncatula] gb|ABK28848.1| exostosin-like protein [Medicago truncatula] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Catalytic, putative 1.205e-10
Putative C-terminus
sp_v3.0_unigene185606 SustainPine v3.0 593
• AutoFact: Polyprotein n=1 Tax=Solanum lycopersicum RepID=Q9ZS84_SOLLC 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene185688 SustainPine v3.0 332
• AutoFact: Receptor-like kinase (Fragment) n=1 Tax=Hordeum vulgare RepID=Q9SWU6_HORVU 6.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative rust resistance kinase Lr10 2.309e-30
Internal
sp_v3.0_unigene186261 SustainPine v3.0 353
• AutoFact: retrotransposable element Tf2 155 kDa protein type 1-like 9.0e-28
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.609e-15
Internal
sp_v3.0_unigene186485 SustainPine v3.0 303
• AutoFact: Putative non-LTR retroelement reverse transcriptase n=1 Tax=Arabidopsis thaliana RepID=O82216_ARATH 5.0e-19
• FL-Next: tr=Putative non-LTR retroelement reverse transcriptase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene186492 SustainPine v3.0 526
• AutoFact: Polyprotein n=1 Tax=Oryza australiensis RepID=Q0ZLH4_9ORYZ 0.0
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 0.0
Putative C-terminus
sp_v3.0_unigene186521 SustainPine v3.0 403
• AutoFact: cytochrome P450 [Pyrus communis] 6.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cytochrome P450 6.863e-21
N-terminus
sp_v3.0_unigene186908 SustainPine v3.0 466
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q7XEK0_ORYSJ 2.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 9.7e-21
Putative Complete
sp_v3.0_unigene187189 SustainPine v3.0 581
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6I5H9_ORYSJ 8.0e-30
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Gag-pol polyprotein, putative 2.307e-06
Internal
sp_v3.0_unigene187222 SustainPine v3.0 507
• AutoFact: RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold n=1 Tax=Medicago truncatula RepID=A2Q2C7_MEDTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.47105e-41
Putative Complete
sp_v3.0_unigene187301 SustainPine v3.0 453
• AutoFact: Unassigned protein
• FL-Next: tr=Tetratricopeptide repeat-containing protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Sma3: Eukaryotic translation initiation factor 3 subunit, putative 4.223e-08
Putative N-terminus
sp_v3.0_unigene187338 SustainPine v3.0 451
• AutoFact: Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQP3_ORYSJ 4.0e-37
• FL-Next: tr=OSIGBa0139I12.6 protein; Oryza sativa (Rice). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 2.24208e-44
Internal
sp_v3.0_unigene187353 SustainPine v3.0 274
• AutoFact: Unassigned protein
• FL-Next: tr=RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 9.658e-23
Internal
sp_v3.0_unigene187426 SustainPine v3.0 450
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 3.00018e-42
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.176e-21
N-terminus
sp_v3.0_unigene187503 SustainPine v3.0 434
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 3.0e-25
• FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
• Sma3: Polyprotein 1.576e-17
C-terminus
sp_v3.0_unigene187553 SustainPine v3.0 552
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 4.101e-21
Putative Complete
sp_v3.0_unigene187681 SustainPine v3.0 232
• AutoFact: OSJNBa0053B21.11 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XKR0_ORYSJ 2.0e-18
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: Retrotransposon protein, putative, unclassified, expressed 4.848e-06
Putative C-terminus
sp_v3.0_unigene187849 SustainPine v3.0 320
• AutoFact: Polyprotein n=1 Tax=Glycine max RepID=Q84ZV5_SOYBN 5.0e-08
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain