Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: RNA-directed DNA polymerase activity

Term: GO:0003964  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene188023 SustainPine v3.0 117
AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus radiata RepID=Q56GF9_PINRA 1.0e-11
FL-Next: tr=Gag-pol polyprotein, putative; Asparagus officinalis (Garden asparagus). 0.0
Sma3: Reverse transcriptase 5.947e-09
Internal
sp_v3.0_unigene188107 SustainPine v3.0 327
AutoFact: Retrotransposon protein, putative, unclassified n=5 Tax=Oryza sativa RepID=Q2QQD0_ORYSJ 3.0e-16
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene188256 SustainPine v3.0 402
AutoFact: polyprotein [Glycine max] 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Lotus japonicus (Lotus corniculatus var. japonicus). 0.0
Sma3: Polyprotein 2.354e-06
Internal
sp_v3.0_unigene188439 SustainPine v3.0 716
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene188459 SustainPine v3.0 325
AutoFact: Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC 1.0e-26
FL-Next: tr=Polyprotein; Primula vulgaris. 0.0
Sma3: Retrotransposon protein, putative, unclassified 6.859e-23
Internal
sp_v3.0_unigene188590 SustainPine v3.0 523
AutoFact: Retrotransposon protein, putative, Ty3-gypsy sub-class n=1 Tax=Oryza sativa Japonica Group RepID=Q53PB2_ORYSJ 5.0e-22
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene188696 SustainPine v3.0 597
AutoFact: Flavonoid 3-hydroxylase, putative n=1 Tax=Ricinus communis RepID=B9S5P8_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cytochrome P450 3.571e-25
Internal
sp_v3.0_unigene188997 SustainPine v3.0 606
AutoFact: Phosphoinositide 3-kinase n=1 Tax=Nicotiana tabacum RepID=Q4QXM0_TOBAC 0.0
FL-Next: sp=Phosphatidylinositol 3-kinase VPS34; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Phosphatidylinositol 3-kinase 1.293e-14
C-terminus
sp_v3.0_unigene189093 SustainPine v3.0 951
AutoFact: rve domain containing protein 5.0e-23
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene189201 SustainPine v3.0 466
AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QZS5_ORYSJ 1.0e-34
FL-Next: tr=Putative retrotransposon protein; Phyllostachys edulis. 0.0
Internal
sp_v3.0_unigene189224 SustainPine v3.0 1142
AutoFact: Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic n=1 Tax=Medicago truncatula RepID=Q2HU05_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 1.905e-11
Putative N-terminus
sp_v3.0_unigene189310 SustainPine v3.0 737
AutoFact: Integrase n=1 Tax=Boechera divaricarpa RepID=B6REL8_9BRAS 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Integrase 1.911e-07
Internal
sp_v3.0_unigene189430 SustainPine v3.0 299
AutoFact: Putative retroelement n=1 Tax=Oryza sativa Japonica Group RepID=Q8H7X6_ORYSJ 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 1.72e-16
Putative Complete
sp_v3.0_unigene189448 SustainPine v3.0 1166
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.02e-18
C-terminus
sp_v3.0_unigene189573 SustainPine v3.0 492
AutoFact: Gag-Pol polyprotein n=4 Tax=Medicago truncatula RepID=B8YLY3_MEDTR 4.0e-30
FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Copia-type polyprotein 1.242e-07
C-terminus
sp_v3.0_unigene189579 SustainPine v3.0 482
AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 3.00004e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Copia-type polyprotein 6.503e-12
Internal
sp_v3.0_unigene189619 SustainPine v3.0 420
AutoFact: Nucleotid_trans domain containing protein 4.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative regulatory protein 7.196e-09
Internal
sp_v3.0_unigene189712 SustainPine v3.0 367
AutoFact: Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO 6.0e-36
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Retrotransposon protein, putative, unclassified 3.533e-23
Internal
sp_v3.0_unigene189881 SustainPine v3.0 346
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SQW9_ARATH 2.0e-36
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, unclassified 9.588e-20
Putative C-terminus
sp_v3.0_unigene189889 SustainPine v3.0 495
AutoFact: RVT_1 domain containing protein 2.0e-15
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Sma3: Retrotransposon protein, putative, Ty3-gypsy subclass 8.173e-15
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain