Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: ligase activity

Term: GO:0016874  Help

Source: GO from Sma3

Ontology: Molecular Function

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene99459 SustainPine v3.0 590
• AutoFact: Similar to gb|AF049930 PGP237-11 from Petunia x hybrida and contains a PF|00097 Zinc (RING) finger domain [Arabidopsis thaliana] gb|AAS47676.1| At1g74760 [Arabidopsis thaliana] gb|AAZ14062.1| At1g74760 [Arabidopsis thaliana] 2.0e-10
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
C-terminus
sp_v3.0_unigene99569 SustainPine v3.0 1007
• AutoFact: E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref|NP_001119465.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97324.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb|AED97328.1| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] 0.0
• FL-Next: Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1 0.0
Internal
sp_v3.0_unigene101290 SustainPine v3.0 781
• AutoFact: RNA ligase isoform 1 [Triticum aestivum] 0.0
• FL-Next: tr=Translation elongation factor EF-1 alpha; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene101370 SustainPine v3.0 649
• AutoFact: long-chain acyl-CoA synthetase [Arabidopsis thaliana] gb|AAL32882.1| A6 anther-specific protein [Arabidopsis thaliana] gb|AAQ56775.1| At4g14070 [Arabidopsis thaliana] gb|ABK88270.1| chloroplast acyl ACP synthetase [Arabidopsis thaliana] gb|AEE83367.1| lon 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acyl-CoA synthetase-like protein 4.169e-09
Internal
sp_v3.0_unigene101396 SustainPine v3.0 586
• AutoFact: Auxin responsive GH3-like protein (Fragment) n=3 Tax=Picea sitchensis RepID=E0ZF61_PICSI 0.0
• FL-Next: tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine). 0.0
• Sma3: GH3 family protein 6.888e-24
C-terminus
sp_v3.0_unigene101698 SustainPine v3.0 374
• AutoFact: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9RBM4_RICCO 8.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene101972 SustainPine v3.0 911
• AutoFact: AMP-binding protein n=5 Tax=Arabidopsis RepID=Q9FFE6_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: AMP dependent ligase, putative 1.157e-37
N-terminus
sp_v3.0_unigene102305 SustainPine v3.0 542
• AutoFact: Acetyl-CoA carboxylase, putative n=1 Tax=Ricinus communis RepID=B9SFG9_RICCO 1.0e-19
• FL-Next: sp=Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial 7.328e-13
C-terminus
sp_v3.0_unigene102345 SustainPine v3.0 329
• AutoFact: Methyltransf_16 domain containing protein 5.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Tumor-related protein 2.314e-08
Internal
sp_v3.0_unigene102392 SustainPine v3.0 1447
• AutoFact: pfam07002, Copine, Copine 6.00036e-42
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copine, putative 1.09e-20
N-terminus
sp_v3.0_unigene102432 SustainPine v3.0 638
• AutoFact: cullin 3B [Arabidopsis thaliana] sp|Q9C9L0.1|CUL3B_ARATH RecName: Full=Cullin-3B; Short=AtCUL3b gb|AAG52544.1|AC013289_11 putative cullin; 66460-68733 [Arabidopsis thaliana] gb|AEE34961.1| cullin 3B [Arabidopsis thaliana] 6.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene102477 SustainPine v3.0 789
• AutoFact: E3 ubiquitin-protein ligase KEG [Arabidopsis thaliana] sp|Q9FY48.2|KEG_ARATH RecName: Full=E3 ubiquitin-protein ligase KEG; AltName: Full=Protein KEEP ON GOING; AltName: Full=RING finger protein KEG gb|ABC46683.1| RING E3 ligase protein [Arabidopsis thali 0.0
• FL-Next: sp=E3 ubiquitin-protein ligase KEG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene102480 SustainPine v3.0 1307
• AutoFact: RING/U-box domain-containing protein [Arabidopsis thaliana] ref|NP_974785.1| RING/U-box domain-containing protein [Arabidopsis thaliana] emb|CAC01778.1| putative protein [Arabidopsis thaliana] gb|AAM98197.1| unknown protein [Arabidopsis thaliana] gb|AAP13 2.0e-17
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: RHB1A 3.208e-08
Complete
sp_v3.0_unigene102980 SustainPine v3.0 312
• AutoFact: Probable indole-3-acetic acid-amido synthetase GH3.5 n=3 Tax=Oryza sativa RepID=GH35_ORYSJ 4.0e-23
• FL-Next: tr=Auxin-induced GH3 protein; Pinus pinaster (Maritime pine). 0.0
• Sma3: GH3 family protein 2.211e-16
Internal
sp_v3.0_unigene103920 SustainPine v3.0 317
• AutoFact: Ankyrin-repeat containing protein, putative n=1 Tax=Ricinus communis RepID=B9RG78_RICCO 5.0e-20
• FL-Next: sp=E3 ubiquitin-protein ligase KEG; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene104729 SustainPine v3.0 532
• AutoFact: acyl-CoA synthase [Oceanicaulis alexandrii HTCC2633] gb|EAP89328.1| acyl-CoA synthase [Oceanicaulis alexandrii HTCC2633] 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Acyl:coa ligase acetate-coa synthetase-like protein 2.525e-26
Putative C-terminus
sp_v3.0_unigene105035 SustainPine v3.0 533
• AutoFact: Acyl:coa ligase n=1 Tax=Populus trichocarpa RepID=B9H5E9_POPTR 4.0e-30
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene105398 SustainPine v3.0 420
• AutoFact: DNA ligase-like n=2 Tax=Oryza sativa Japonica Group RepID=Q8RZQ7_ORYSJ 1.0e-31
• FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
• Sma3: DNA ligase-like 1.964e-09
Internal
sp_v3.0_unigene105720 SustainPine v3.0 484
• AutoFact: RNA ligase [Arabidopsis thaliana] ref|NP_001154320.1| RNA ligase [Arabidopsis thaliana] dbj|BAF02126.1| translation elongation factor EF-1 alpha [Arabidopsis thaliana] gb|AEE28210.1| RNA ligase [Arabidopsis thaliana] gb|AEE28211.1| RNA ligase [Arabidopsis 4.0e-37
• FL-Next: tr=RNA ligase isoform; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
• Sma3: RNA ligase isoform 3 5.586e-10
Internal
sp_v3.0_unigene106227 SustainPine v3.0 409
• AutoFact: putative COP1, constitutive photomorphogenesis 1 [Oryza sativa Japonica Group] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: COP1 regulatory protein 1.256e-11
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain