Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene37874 SustainPine v3.0 1955
• AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9HAW9_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 4.77843e-43
Complete
sp_v3.0_unigene38938 SustainPine v3.0 545
• AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 0.0
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 7.815e-10
Internal
sp_v3.0_unigene39050 SustainPine v3.0 500
• AutoFact: RVT_1 domain containing protein 2.0e-19
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg01250; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
Putative Complete
sp_v3.0_unigene40130 SustainPine v3.0 218
• AutoFact: Cryptochrome DASH, chloroplastic/mitochondrial n=4 Tax=Oryza sativa RepID=CRYD_ORYSJ 1.0e-18
• FL-Next: sp=Cryptochrome DASH, chloroplastic/mitochondrial; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene40520 SustainPine v3.0 2471
• AutoFact: Serine-type endopeptidase n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD4_CUCME 0.0
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Putative prolyl endopeptidase 8.619e-09
C-terminus
sp_v3.0_unigene40521 SustainPine v3.0 532
• AutoFact: putative prolyl endopeptidase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
• Sma3: Putative prolyl endopeptidase 1.273e-08
Internal
sp_v3.0_unigene40551 SustainPine v3.0 3508
• AutoFact: Retrotransposon protein, putative, unclassified n=3 Tax=Oryza sativa RepID=Q2QQV8_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene40693 SustainPine v3.0 566
• AutoFact: DNA polymerase kappa subunit [Arabidopsis thaliana] gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana] gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana] 0.0
• FL-Next: Isoform 4 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
• Sma3: Putative DNA-directed polymerase, having alternative splicing products 1.945e-09
Internal
sp_v3.0_unigene40706 SustainPine v3.0 979
• AutoFact: PREDICTED: similar to Os07g0681600 n=1 Tax=Vitis vinifera RepID=UPI00019834DE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA Helicase 5.744e-14
Internal
sp_v3.0_unigene40912 SustainPine v3.0 489
• AutoFact: PPR multi-domain protein 8.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 8.959e-14
Putative Complete
sp_v3.0_unigene41071 SustainPine v3.0 439
• AutoFact: serine/threonine-protein kinase ATR [Arabidopsis thaliana] sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; Al 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Serine/threonine-protein kinase ATR 7.595e-08
Putative N-terminus
sp_v3.0_unigene41084 SustainPine v3.0 345
• AutoFact: putative DNA repair protein [Ipomoea trifida] dbj|BAF36331.1| hypothetical protein [Ipomoea trifida] 1.0e-32
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA repair helicase rad5,16, putative 1.7e-07
Internal
sp_v3.0_unigene41219 SustainPine v3.0 948
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene41771 SustainPine v3.0 869
• AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 0.0
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene42160 SustainPine v3.0 407
• AutoFact: UvrD/REP helicase n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GBH8_CHLAD 3.0e-24
• FL-Next: tr=ATP-dependent DNA helicase; Ectocarpus siliculosus (Brown alga). 0.0
Internal
sp_v3.0_unigene42450 SustainPine v3.0 1008
• AutoFact: DNA photolyase, putative n=1 Tax=Ricinus communis RepID=B9SPQ6_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cryptochrome DASH, chloroplastic/mitochondrial 2.083e-16
Putative C-terminus
sp_v3.0_unigene42926 SustainPine v3.0 452
• AutoFact: SNF2 superfamily RAD5 protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S188_PHYPA 2.0e-30
• FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA repair helicase rad5,16, putative 2.343e-07
Internal
sp_v3.0_unigene43198 SustainPine v3.0 124
• AutoFact: DNA pol lambda n=3 Tax=Arabidopsis RepID=Q9FNY4_ARATH 3.0e-09
• FL-Next: tr=DNA pol lambda; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA polymerase lambda 1.607e-09
Internal
sp_v3.0_unigene43353 SustainPine v3.0 141
• AutoFact: putative helicase [Arabidopsis thaliana] 3.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene43427 SustainPine v3.0 128
• AutoFact: Protein ROS1, putative n=1 Tax=Ricinus communis RepID=B9SRG6_RICCO 7.0e-15
• FL-Next: Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Repressor of silencing 1 2.116e-08
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain