Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene142379 SustainPine v3.0 964
• AutoFact: long chain acyl-CoA synthetase [Brassica napus] 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Long-chain-fatty-acid CoA ligase, putative 5.237e-08
N-terminus
sp_v3.0_unigene142472 SustainPine v3.0 567
• AutoFact: amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] gb|AEE27799.1| amyloid beta precursor protein binding protein 1 [Arabidopsis thaliana] 4.0e-30
• FL-Next: sp=NEDD8-activating enzyme E1 regulatory subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene143613 SustainPine v3.0 491
• AutoFact: Autoinhibited calcium ATPase n=2 Tax=Populus trichocarpa RepID=B9HK60_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 1.387e-39
Internal
sp_v3.0_unigene143655 SustainPine v3.0 195
• AutoFact: Predicted protein n=2 Tax=Hordeum vulgare RepID=F2E6C9_HORVD 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 1.523e-37
Internal
sp_v3.0_unigene144499 SustainPine v3.0 970
• AutoFact: Pre-mRNA-processing factor 19 [Arabidopsis thaliana] sp|Q94BR4.1|PR19A_ARATH RecName: Full=Pre-mRNA-processing factor 19 homolog 1; AltName: Full=MOS4-associated complex protein 3A; Short=MAC protein 3A; AltName: Full=Plant U-box protein 59; AltName: Full 3.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: GAST1 protein, putative 1.287e-07
N-terminus
sp_v3.0_unigene148058 SustainPine v3.0 479
• AutoFact: Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q7Y141_ORYSJ 8.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.238e-22
Internal
sp_v3.0_unigene148137 SustainPine v3.0 490
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL 3.00004e-41
• FL-Next: sp=Uncharacterized mitochondrial protein AtMg01250; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. 0.0
• Sma3: RNA-directed DNA polymerase (Reverse transcriptase) 9.831e-10
Putative N-terminus
sp_v3.0_unigene148254 SustainPine v3.0 403
• AutoFact: (6-4)DNA photolyase [Arabidopsis thaliana] sp|O48652.2|UVR3_ARATH RecName: Full=(6-4)DNA photolyase; AltName: Full=Protein UV repair defective 3 gb|AEE75703.1| (6-4)DNA photolyase [Arabidopsis thaliana] 3.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene148563 SustainPine v3.0 274
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene149330 SustainPine v3.0 303
• AutoFact: putative holliday junction resolvase [Arabidopsis thaliana] gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana] 7.0e-08
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene149627 SustainPine v3.0 267
• AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 2.0e-06
• FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Splicing factor 45 2.9e-09
C-terminus
sp_v3.0_unigene149724 SustainPine v3.0 157
• AutoFact: Isoform 2 of Exonuclease 1 n=1 Tax=Arabidopsis thaliana RepID=Q8L6Z7-2 9.0e-08
• FL-Next: Isoform 2 of Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 0.0
Internal
sp_v3.0_unigene149923 SustainPine v3.0 115
• AutoFact: DNA excision repair protein ERCC-1 [Arabidopsis thaliana] sp|Q9MA98.1|ERCC1_ARATH RecName: Full=DNA excision repair protein ERCC-1; Short=AtERCC1; Short=AtRAD10; AltName: Full=Ultraviolet hypersensitive 7 gb|AAF27027.1|AC009177_17 putative nucleotide repa 5.0e-09
• FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene151291 SustainPine v3.0 438
• AutoFact: MGC115611 protein n=4 Tax=Xenopus RepID=Q498E8_XENLA 2.0e-40
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative cullin protein 9.682e-13
Putative Complete
sp_v3.0_unigene151761 SustainPine v3.0 243
• AutoFact: tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Flavobacterium johnsoniae UW101 RepID=MNMG_FLAJ1 6.0e-36
• FL-Next: tr=Putative uncharacterized protein; Ectocarpus siliculosus (Brown alga). 0.0
Internal
sp_v3.0_unigene152380 SustainPine v3.0 355
• AutoFact: P-type ATPase n=1 Tax=Dictyostelium fasciculatum RepID=F4Q6Z7_9MYCE 1.0e-21
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene153665 SustainPine v3.0 461
• AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9H9I2_POPTR 3.00004e-41
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 4.283e-21
Putative C-terminus
sp_v3.0_unigene153818 SustainPine v3.0 377
• AutoFact: PREDICTED: ribonucleotide reductase M2 polypeptide-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CB9528 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribonucleoside-diphosphate reductase small chain 9.178e-11
Internal
sp_v3.0_unigene154658 SustainPine v3.0 502
• AutoFact: Flap endonuclease 1 n=3 Tax=Clupeocephala RepID=FEN1A_DANRE 0.0
• FL-Next: sp=Flap endonuclease 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Flap endonuclease 1a 6.823e-09
Internal
sp_v3.0_unigene154828 SustainPine v3.0 493
• AutoFact: ATP-dependent DNA helicase RecG n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PR77_CHIPD 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain