Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene129477 SustainPine v3.0 585
AutoFact: Putative cullin [Oryza sativa] 1.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative cullin protein 5.815e-12
C-terminus
sp_v3.0_unigene129488 SustainPine v3.0 288
AutoFact: DNA repair protein rad9, putative n=1 Tax=Ricinus communis RepID=B9RFA6_RICCO 8.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene129496 SustainPine v3.0 348
AutoFact: Putative starch synthase [Oryza sativa Japonica Group] gb|EAZ25012.1| hypothetical protein OsJ_08794 [Oryza sativa Japonica Group] 7.0e-27
FL-Next: tr=Starch synthase VI; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Starch synthase V 3.162e-21
Internal
sp_v3.0_unigene129858 SustainPine v3.0 489
AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH 8.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 2.708e-07
Internal
sp_v3.0_unigene129897 SustainPine v3.0 653
AutoFact: hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding 0.0
FL-Next: sp=Fanconi-associated nuclease 1 homolog; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene129902 SustainPine v3.0 289
AutoFact: geminivirus Rep-interacting motor protein [Arabidopsis thaliana] gb|AED91547.1| geminivirus Rep-interacting motor protein [Arabidopsis thaliana] 2.0e-17
FL-Next: sp=Geminivirus Rep-interacting motor protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene130626 SustainPine v3.0 487
AutoFact: putative nucleotide repair protein [Oryza sativa Japonica Group] 0.0
FL-Next: sp=DNA excision repair protein ERCC-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene130632 SustainPine v3.0 333
AutoFact: U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AED97425.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] 4.99983e-42
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene131176 SustainPine v3.0 329
AutoFact: putative pentatricopeptide repeat protein [Gossypium hirsutum] 5.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide (PPR) repeat-containing protein-like 3.315e-12
Internal
sp_v3.0_unigene131586 SustainPine v3.0 420
AutoFact: Calcium-transporting ATPase 1 n=1 Tax=Ceratopteris richardii RepID=Q7XBH9_CERRI 2.0e-33
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 2.548e-38
Putative N-terminus
sp_v3.0_unigene132437 SustainPine v3.0 419
AutoFact: Cation-transporting atpase plant, putative n=1 Tax=Ricinus communis RepID=B9RWZ4_RICCO 5.0e-40
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 9.528e-40
Internal
sp_v3.0_unigene132749 SustainPine v3.0 325
AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 1.96182e-44
FL-Next: tr=U5 small nuclear ribonucleoprotein 200 kDa helicase; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene132843 SustainPine v3.0 351
AutoFact: putative dicarboxylate/tricarboxylate carrier [Helianthus tuberosus] 2.0e-39
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Dicarboxylate/tricarboxylate carrier 3.208e-18
Internal
sp_v3.0_unigene133612 SustainPine v3.0 656
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Calmodulin binding protein 1.124e-20
Internal
sp_v3.0_unigene137157 SustainPine v3.0 278
AutoFact: Light-mediated development protein DET1 [Arabidopsis thaliana] sp|P48732.2|DET1_ARATH RecName: Full=Light-mediated development protein DET1; AltName: Full=Protein DEETIOLATED 1 gb|AAU05471.1| At4g10180 [Arabidopsis thaliana] gb|AAW30032.1| At4g10180 [Arab 2.0e-16
FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Light-mediated development protein DET1 1.535e-14
Internal
sp_v3.0_unigene137426 SustainPine v3.0 346
AutoFact: PPR multi-domain protein 5.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 1.257e-15
Internal
sp_v3.0_unigene137502 SustainPine v3.0 289
AutoFact: similar to FLAP endonuclease-1 (SW:P39748) [Arabidopsis thaliana] 9.0e-24
FL-Next: sp=Flap endonuclease 1; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Flap endonuclease 1a 5.451e-09
Internal
sp_v3.0_unigene137809 SustainPine v3.0 277
AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53360, mitochondrial; Flags: Precursor emb|CAB67643.1| putative protein [Arabidopsis thaliana] gb|AEE7 6.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 8.40779e-45
Internal
sp_v3.0_unigene140323 SustainPine v3.0 381
AutoFact: UV-damaged DNA binding factor - like protein [Arabidopsis thaliana] 1.0e-14
FL-Next: sp=DNA damage-binding protein 1a; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene142319 SustainPine v3.0 931
AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9HAW9_POPTR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Autoinhibited calcium ATPase 6.982e-40
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain