Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene109592 SustainPine v3.0 447
• AutoFact: polymerase ATREV1-630 [Arabidopsis thaliana] 0.0
• FL-Next: Isoform 4 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Internal
sp_v3.0_unigene110113 SustainPine v3.0 647
• AutoFact: U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] dbj|BAB10376.1| RNA helicase [Arabidopsis thaliana] gb|AED97426.1| U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene110713 SustainPine v3.0 329
• AutoFact: putative RNA helicase [Arabidopsis thaliana] 0.0
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene111052 SustainPine v3.0 295
• AutoFact: putative helicase [Arabidopsis thaliana] 2.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CarD-like transcriptional regulator family protein, expressed 4.688e-09
Putative N-terminus
sp_v3.0_unigene111496 SustainPine v3.0 443
• AutoFact: putative DNA polymerase [Oryza sativa Japonica Group] 0.0
• FL-Next: Isoform 4 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
Internal
sp_v3.0_unigene112336 SustainPine v3.0 273
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 1.0e-26
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 6.664e-16
Internal
sp_v3.0_unigene113022 SustainPine v3.0 272
• AutoFact: DNA polymerase kappa subunit [Arabidopsis thaliana] gb|AAS91582.1| DNA-directed polymerase kappa [Arabidopsis thaliana] gb|AEE32503.1| DNA polymerase kappa subunit [Arabidopsis thaliana] 5.0e-12
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene113257 SustainPine v3.0 322
• AutoFact: Ap endonuclease, putative n=1 Tax=Ricinus communis RepID=B9S6N7_RICCO 3.0e-26
• FL-Next: tr=Ap endonuclease, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene113276 SustainPine v3.0 416
• AutoFact: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T4R0_RICCO 4.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 2.11596e-43
Putative Complete
sp_v3.0_unigene113406 SustainPine v3.0 240
• AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 9.0e-21
• FL-Next: sp=FACT complex subunit SPT16; Zea mays (Maize). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 2.911e-13
Internal
sp_v3.0_unigene113427 SustainPine v3.0 439
• AutoFact: Unassigned protein
• FL-Next: sp=Flap endonuclease GEN-like 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene114260 SustainPine v3.0 486
• AutoFact: FACT complex subunit SPT16 [Zea mays] sp|Q8H6B1.1|SPT16_MAIZE RecName: Full=FACT complex subunit SPT16; AltName: Full=Facilitates chromatin transcription complex subunit SPT16; AltName: Full=Global transcription factor group C protein 102 gb|AAN41252.1| g 2.0e-23
• FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Global transcription factor group 2.57e-10
N-terminus
sp_v3.0_unigene115463 SustainPine v3.0 169
• AutoFact: Cryptochrome DASH, chloroplastic/mitochondrial n=3 Tax=Arabidopsis RepID=CRYD_ARATH 1.0e-16
• FL-Next: sp=Cryptochrome DASH, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Cryptochrome DASH, chloroplastic/mitochondrial 2.481e-12
Internal
sp_v3.0_unigene116069 SustainPine v3.0 299
• AutoFact: alpha/beta fold family hydrolase [Synechococcus sp. JA-3-3Ab] gb|ABC98707.1| hydrolase, alpha/beta fold family [Synechococcus sp. JA-3-3Ab] 2.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene116593 SustainPine v3.0 332
• AutoFact: Starch synthase V n=3 Tax=Vitis vinifera RepID=B2ZGM8_VITVI 3.0e-25
• FL-Next: tr=Starch synthase VI; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Starch synthase V 1.097e-09
Internal
sp_v3.0_unigene118130 SustainPine v3.0 299
• AutoFact: FACT complex subunit SPT16 n=4 Tax=Oryza sativa RepID=SPT16_ORYSJ 1.0e-20
• FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 2.783e-09
Internal
sp_v3.0_unigene118324 SustainPine v3.0 212
• AutoFact: GlimmerM protein 276 n=1 Tax=Beta vulgaris RepID=Q20CC6_BETVU 3.0e-24
• FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Serine/threonine-protein kinase ATR 1.251e-08
Internal
sp_v3.0_unigene119827 SustainPine v3.0 224
• AutoFact: FACT complex subunit SPT16, putative n=1 Tax=Ricinus communis RepID=B9RFP6_RICCO 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 6.203e-13
Internal
sp_v3.0_unigene119864 SustainPine v3.0 375
• AutoFact: Myb n=1 Tax=Nicotiana tabacum RepID=Q948S5_TOBAC 0.0
• FL-Next: tr=R2R3-MYB transcription factor MYB7; Pinus taeda (Loblolly pine). 0.0
• Sma3: MYB transcription factor 2.006e-24
Internal
sp_v3.0_unigene121256 SustainPine v3.0 392
• AutoFact: DNA ligase n=1 Tax=Oryza sativa Japonica Group RepID=B9EYN2_ORYSJ 2.0e-15
• FL-Next: sp=DNA ligase; Oryza sativa subsp. japonica (Rice). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain