Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene104474 SustainPine v3.0 520
AutoFact: DNA/RNA helicase protein RAD5 [Arabidopsis thaliana] sp|Q9FNI6.1|SM3L2_ARATH RecName: Full=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Short=SMARCA3-like protein 2 dbj|BAB11681.1| DNA repa 0.0
FL-Next: sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA repair helicase rad5,16, putative 2.361e-07
Internal
sp_v3.0_unigene104491 SustainPine v3.0 491
AutoFact: Transcription-coupled repair protein CSB/RAD26 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SCT4_PHYPA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: SNF2 family DNA-dependent ATPase 3.928e-26
Internal
sp_v3.0_unigene104547 SustainPine v3.0 198
AutoFact: Exonuclease, putative n=1 Tax=Ricinus communis RepID=B9SU84_RICCO 2.0e-10
FL-Next: tr=Exonuclease, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene104852 SustainPine v3.0 491
AutoFact: DNA repair protein RAD50 [Arabidopsis thaliana] sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb|AAD15407.2| putative RAD50 DNA repair protein 7.0e-30
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene105130 SustainPine v3.0 208
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene106051 SustainPine v3.0 203
AutoFact: glucose-inhibited division A family protein [Musa acuminata] 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene106203 SustainPine v3.0 195
AutoFact: F21M11.4 protein n=1 Tax=Arabidopsis thaliana RepID=Q9ZWC2_ARATH 6.0e-19
FL-Next: sp=Protein BREAST CANCER SUSCEPTIBILITY 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Brca1 associated ring domain, putative 5.167e-09
Internal
sp_v3.0_unigene106227 SustainPine v3.0 409
AutoFact: putative COP1, constitutive photomorphogenesis 1 [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: COP1 regulatory protein 1.256e-11
Putative N-terminus
sp_v3.0_unigene106470 SustainPine v3.0 412
AutoFact: [L] COG0415 Deoxyribodipyrimidine photolyase 4.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cryptochrome DASH, chloroplastic/mitochondrial 1.658e-12
Internal
sp_v3.0_unigene106536 SustainPine v3.0 228
AutoFact: exonuclease 1 [Arabidopsis thaliana] gb|AEE31111.1| exonuclease 1 [Arabidopsis thaliana] 3.0e-26
FL-Next: Isoform 2 of Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 0.0
Sma3: Exonuclease 1 1.27e-08
Internal
sp_v3.0_unigene106556 SustainPine v3.0 427
AutoFact: SPA1-related 4 protein [Arabidopsis thaliana] ref|NP_849802.1| SPA1-related 4 protein [Arabidopsis thaliana] sp|Q94BM7.1|SPA4_ARATH RecName: Full=Protein SPA1-RELATED 4 gb|AAK64180.1| putative phytochrome A supressor spa1 protein [Arabidopsis thaliana] gb 4.2039e-45
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ubiquitin ligase protein cop1, putative 7.641e-14
Putative N-terminus
sp_v3.0_unigene106620 SustainPine v3.0 238
AutoFact: Type II CPD DNA photolyase n=1 Tax=Pityrogramma austroamericana RepID=Q6WS77_9MONI 2.0e-23
FL-Next: Isoform 2 of Deoxyribodipyrimidine photo-lyase OS=Arabidopsis thaliana GN=PHR1 0.0
Sma3: CPD photolyase 2.887e-21
Internal
sp_v3.0_unigene106771 SustainPine v3.0 398
AutoFact: putative helicase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: CarD-like transcriptional regulator family protein, expressed 6.985e-09
Internal
sp_v3.0_unigene106911 SustainPine v3.0 261
AutoFact: DNA polymerase eta subunit [Arabidopsis thaliana] gb|AAK25993.1|AF360283_1 putative DNA-damage-inducible protein P [Arabidopsis thaliana] gb|AAM44927.1| putative DNA-damage-inducible protein P [Arabidopsis thaliana] gb|AED95154.1| DNA polymerase eta subun 7.0e-24
FL-Next: tr=DNA polymerase eta, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene107010 SustainPine v3.0 266
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene107256 SustainPine v3.0 371
AutoFact: FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA 8.0e-29
FL-Next: sp=FACT complex subunit SPT16; Zea mays (Maize). 0.0
Sma3: Global transcription factor group 2.502e-10
Internal
sp_v3.0_unigene108390 SustainPine v3.0 582
AutoFact: RNA helicase n=4 Tax=Arabidopsis RepID=Q9FNQ1_ARATH 0.0
FL-Next: tr=Activating signal cointegrator 1 complex subunit; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene108801 SustainPine v3.0 604
AutoFact: Ataxia telangiectasia mutated, putative n=1 Tax=Ricinus communis RepID=B9RB21_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Target of rapamycin kinase 1.134e-11
Putative N-terminus
sp_v3.0_unigene109176 SustainPine v3.0 187
AutoFact: poly(ADP-ribose) polymerase [Zea mays] 2.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Poly[ADP-ribose] synthetase 1 4.83e-13
Internal
sp_v3.0_unigene109551 SustainPine v3.0 401
AutoFact: pfam01535, PPR, PPR repeat 3.0e-06
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pentatricopeptide repeat-containing protein, putative 5.226e-21
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain