Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene76619 SustainPine v3.0 321
AutoFact: RAD26-like SNF2 family DNA-dependent ATPase n=1 Tax=Laccaria bicolor S238N-H82 RepID=B0D7Q2_LACBS 1.0e-24
FL-Next: tr=GAGA-binding transcriptional activator; Pinus taeda (Loblolly pine). 0.0
Sma3: SNF2 super family 3.206e-32
Putative C-terminus
sp_v3.0_unigene77193 SustainPine v3.0 153
AutoFact: Unassigned protein
FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
Sma3: Repressor of silencing 1 1.284e-08
Internal
sp_v3.0_unigene77270 SustainPine v3.0 201
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: IQ calmodulin-binding motif family protein, expressed 5.337e-20
Internal
sp_v3.0_unigene77649 SustainPine v3.0 284
AutoFact: ATP-dependent RNA helicase HAS1 [Coprinopsis cinerea okayama7#130] gb|EAU88940.1| ATP-dependent RNA helicase HAS1 [Coprinopsis cinerea okayama7#130] 7.0e-32
FL-Next: sp=DEAD-box ATP-dependent RNA helicase 51; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DEAD-box ATP-dependent RNA helicase 27 1.042e-08
Internal
sp_v3.0_unigene77760 SustainPine v3.0 404
AutoFact: PREDICTED: similar to starch synthase V, partial n=1 Tax=Vitis vinifera RepID=UPI0001986081 8.0e-17
FL-Next: tr=Starch synthase V; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene77893 SustainPine v3.0 327
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene78365 SustainPine v3.0 306
AutoFact: Os01g0132100 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0JQY4_ORYSJ 7.0e-18
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ve resistance gene analog 2.309e-26
Internal
sp_v3.0_unigene78898 SustainPine v3.0 158
AutoFact: Blue light photoreceptor n=1 Tax=Adiantum capillus-veneris RepID=Q9S7R6_ADICA 1.0e-19
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Cryptochrome 2 8.169e-31
Internal
sp_v3.0_unigene79401 SustainPine v3.0 235
AutoFact: Serine/threonine-protein kinase ATM n=3 Tax=rosids RepID=ATM_ARATH 2.0e-28
FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79561 SustainPine v3.0 283
AutoFact: GlimmerM protein 276 n=1 Tax=Beta vulgaris RepID=Q20CC6_BETVU 7.0e-10
FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. indica (Rice). 0.0
Internal
sp_v3.0_unigene79573 SustainPine v3.0 219
AutoFact: ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana] 2.0e-23
FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene79760 SustainPine v3.0 274
AutoFact: serine/threonine-protein kinase ATR [Arabidopsis thaliana] sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; Al 4.0e-31
FL-Next: sp=Serine/threonine-protein kinase ATR; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Serine/threonine-protein kinase ATR 1.701e-08
Internal
sp_v3.0_unigene79858 SustainPine v3.0 129
AutoFact: DNA excision repair protein E [Arabidopsis thaliana] gb|AAD08945.1| putative SNF2/RAD54 family DNA repair and recombination protein [Arabidopsis thaliana] gb|AEC06805.1| DNA excision repair protein E [Arabidopsis thaliana] 8.0e-14
FL-Next: tr=Putative RAD26; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene80069 SustainPine v3.0 299
AutoFact: cell cycle checkpoint protein [Arabidopsis thaliana] gb|AAM91646.1| unknown protein [Arabidopsis thaliana] gb|AAR24667.1| At4g17760 [Arabidopsis thaliana] emb|CAE55213.1| Rad1-like protein [Arabidopsis thaliana] dbj|BAD43778.1| unknown protein [Arabidopsi 2.0e-14
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Sma3: Rad1-like protein 3.327e-13
Internal
sp_v3.0_unigene80116 SustainPine v3.0 176
AutoFact: soluble glycogen synthase-related protein [Arabidopsis thaliana] dbj|BAC43519.1| unknown protein [Arabidopsis thaliana] gb|ABJ17089.1| At5g65685 [Arabidopsis thaliana] gb|AED98089.1| soluble glycogen synthase-related protein [Arabidopsis thaliana] 5.0e-18
FL-Next: tr=Starch synthase VI; Picea glauca (White spruce) (Pinus glauca). 0.0
Sma3: Starch synthase V 2.888e-22
Internal
sp_v3.0_unigene80276 SustainPine v3.0 153
AutoFact: DNA polymerase lambda [Oryza sativa Japonica Group] 1.0e-06
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene80365 SustainPine v3.0 146
AutoFact: glucose-inhibited division family A protein [Arabidopsis thaliana] gb|AAD28643.1| similar to glucose inhibited division protein A from prokaryotes [Arabidopsis thaliana] gb|AEC06233.1| glucose-inhibited division family A protein [Arabidopsis thaliana] 1.0e-05
FL-Next: tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene80484 SustainPine v3.0 139
AutoFact: DNA polymerase lambda subunit [Arabidopsis thaliana] emb|CAC21394.1| DNA polymerase lambda [Arabidopsis thaliana] gb|ABE65612.1| DNA polymerase lambda [Arabidopsis thaliana] gb|ADM33939.1| DNA pol lambda [Arabidopsis thaliana] gb|AEE28588.1| DNA polymeras 3.0e-12
FL-Next: tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley). 0.0
Sma3: DNA polymerase lambda 2.116e-09
Internal
sp_v3.0_unigene80496 SustainPine v3.0 263
AutoFact: DNA ligase n=1 Tax=Oryza sativa RepID=Q01KE4_ORYSA 3.0e-15
FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA ligase 2.851e-07
Internal
sp_v3.0_unigene80582 SustainPine v3.0 154
AutoFact: Protein DAMAGED DNA-BINDING 2 n=2 Tax=Arabidopsis RepID=DDB2_ARATH 8.0e-11
FL-Next: sp=Protein DAMAGED DNA-BINDING 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain