Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene68903 SustainPine v3.0 367
• AutoFact: DNA repair protein rad9, putative n=1 Tax=Ricinus communis RepID=B9RFA6_RICCO 1.0e-20
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene69442 SustainPine v3.0 204
• AutoFact: DNA repair protein REV1 n=8 Tax=Arabidopsis RepID=A3EWL3_ARATH 2.0e-17
• FL-Next: Isoform 6 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 0.0
• Sma3: Deoxycytidyl transferase 2.796e-09
Putative C-terminus
sp_v3.0_unigene69991 SustainPine v3.0 413
• AutoFact: Holliday junction ATP-dependent DNA helicase ruvB n=4 Tax=Staphylococcus aureus RepID=RUVB_STAAB 0.0
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice). 0.0
N-terminus
sp_v3.0_unigene70490 SustainPine v3.0 434
• AutoFact: DNA polymerase IV n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SDT5_ACIJO 0.0
• FL-Next: sp=DNA repair protein REV1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene70507 SustainPine v3.0 342
• AutoFact: Calcium ATPase n=3 Tax=Papilionoideae RepID=D3YBB1_TRIRP 6.0e-36
• FL-Next: sp=Calcium-transporting ATPase 1, plasma membrane-type; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Autoinhibited calcium ATPase 1.61e-21
Internal
sp_v3.0_unigene70918 SustainPine v3.0 427
• AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein n=2 Tax=Arabidopsis thaliana RepID=Q0WVW9_ARATH 5.0e-10
• FL-Next: tr=ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene70926 SustainPine v3.0 343
• AutoFact: PREDICTED: similar to Tetratricopeptide-like helical n=1 Tax=Vitis vinifera RepID=UPI0001984A05 4.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 3.869e-14
N-terminus
sp_v3.0_unigene71438 SustainPine v3.0 218
• AutoFact: DNA-damage repair protein drt111, putative n=1 Tax=Ricinus communis RepID=B9SB37_RICCO 4.0e-18
• FL-Next: sp=DNA-damage-repair/toleration protein DRT111, chloroplastic; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Splicing factor 45 1.426e-09
C-terminus
sp_v3.0_unigene71635 SustainPine v3.0 503
• AutoFact: serine/threonine-protein kinase ATR [Arabidopsis thaliana] sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; Al 0.0
• FL-Next: sp=Serine/threonine-protein kinase ATR; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Serine/threonine-protein kinase ATR 4.294e-08
Internal
sp_v3.0_unigene71861 SustainPine v3.0 295
• AutoFact: DNA ligase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TSX4_VITVI 2.0e-28
• FL-Next: Isoform 3 of DNA ligase 1 OS=Arabidopsis thaliana GN=LIG1 0.0
Internal
sp_v3.0_unigene71934 SustainPine v3.0 351
• AutoFact: putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa Japonica Group] gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group] 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 4.564e-14
N-terminus
sp_v3.0_unigene72604 SustainPine v3.0 161
• AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 1.0e-13
• FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
• Sma3: Recombination signal sequence recognition protein 1 9.034e-18
Internal
sp_v3.0_unigene72728 SustainPine v3.0 146
• AutoFact: calcium-transporting ATPase 8 [Arabidopsis thaliana] ref|NP_200521.3| calcium-transporting ATPase 8 [Arabidopsis thaliana] sp|Q9LF79.1|ACA8_ARATH RecName: Full=Calcium-transporting ATPase 8, plasma membrane-type; AltName: Full=Ca(2+)-ATPase isoform 8 emb| 4.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 3.492e-29
Internal
sp_v3.0_unigene72751 SustainPine v3.0 160
• AutoFact: oligopeptidase B [Triticum aestivum] 9.0e-11
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
• Sma3: Oligopeptidase B, putative 1.647e-08
Internal
sp_v3.0_unigene73003 SustainPine v3.0 230
• AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ n 5.0e-14
• FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene73317 SustainPine v3.0 249
• AutoFact: deetiolated 1-like protein [Capsicum annuum] 9.0e-18
• FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: Light-mediated development protein DET1 2.258e-14
Internal
sp_v3.0_unigene73818 SustainPine v3.0 427
• AutoFact: pfam00875, DNA_photolyase, DNA photolyase 2.0e-12
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cryptochrome 1 1.244e-21
Internal
sp_v3.0_unigene73904 SustainPine v3.0 454
• AutoFact: Autoinhibited calcium ATPase n=1 Tax=Populus trichocarpa RepID=B9HAW9_POPTR 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Autoinhibited calcium ATPase 2.569e-40
N-terminus
sp_v3.0_unigene75373 SustainPine v3.0 320
• AutoFact: GlimmerM protein 276 n=1 Tax=Beta vulgaris RepID=Q20CC6_BETVU 3.0e-28
• FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Serine/threonine-protein kinase ATR 1.052e-08
Internal
sp_v3.0_unigene75883 SustainPine v3.0 469
• AutoFact: Poly-(ADP-ribose) polymerase I n=1 Tax=Aplysia californica RepID=C8CCN1_APLCA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Poly[ADP-ribose] synthetase 1 3.448e-12
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain