Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene65040 SustainPine v3.0 236
• AutoFact: pfam00875, DNA_photolyase, DNA photolyase 4.0e-15
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cryptochrome DASH, chloroplastic/mitochondrial 1.896e-12
Internal
sp_v3.0_unigene65115 SustainPine v3.0 227
• AutoFact: Isoform 2 of Transcriptional activator DEMETER n=1 Tax=Arabidopsis thaliana RepID=Q8LK56-2 6.0e-14
• FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Repressor of silencing 1 6.042e-09
Internal
sp_v3.0_unigene65357 SustainPine v3.0 113
• AutoFact: serine/threonine-protein kinase ATR [Arabidopsis thaliana] sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; Al 3.0e-13
• FL-Next: sp=Serine/threonine-protein kinase ATR; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Serine/threonine-protein kinase ATR 1.975e-08
Internal
sp_v3.0_unigene65712 SustainPine v3.0 353
• AutoFact: FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA 4.0e-27
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 3.108e-13
Internal
sp_v3.0_unigene66130 SustainPine v3.0 395
• AutoFact: Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa Japonica Group RepID=Q10FX2_ORYSJ 1.0e-13
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene66479 SustainPine v3.0 344
• AutoFact: peroxin 6 [Helianthus annuus] 8.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene66649 SustainPine v3.0 146
• AutoFact: putative translesion synthesis polymerase RAD30 [Arabidopsis thaliana] 4.0e-12
• FL-Next: tr=Translesion synthesis DNA polymerase eta splice variant; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene66676 SustainPine v3.0 402
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana] gb|AEC06244.1| pentatricopeptide repe 2.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 9.43e-23
Internal
sp_v3.0_unigene66946 SustainPine v3.0 424
• AutoFact: pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana] emb|CAB77760.1| hypothetical protein 5.0e-37
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pentatricopeptide repeat-containing protein, putative 2.023e-12
Internal
sp_v3.0_unigene67302 SustainPine v3.0 190
• AutoFact: DNA glycosylase n=2 Tax=Populus trichocarpa RepID=B9HW11_POPTR 5.0e-21
• FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Repressor of silencing 1 1.725e-08
Internal
sp_v3.0_unigene67333 SustainPine v3.0 278
• AutoFact: DNA photolyase, putative n=1 Tax=Ricinus communis RepID=B9SPQ7_RICCO 5.0e-09
• FL-Next: sp=Cryptochrome DASH, chloroplastic/mitochondrial; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Internal
sp_v3.0_unigene67410 SustainPine v3.0 311
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein At2g30350 9.277e-10
Putative N-terminus
sp_v3.0_unigene67612 SustainPine v3.0 234
• AutoFact: Cryptochrome DASH, chloroplastic/mitochondrial n=1 Tax=Solanum lycopersicum RepID=CRYD_SOLLC 3.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cryptochrome DASH, chloroplastic/mitochondrial 1.826e-12
Internal
sp_v3.0_unigene67954 SustainPine v3.0 257
• AutoFact: Endonuclease V protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q653Z3_ORYSJ 8.0e-28
• FL-Next: tr=Endonuclease V protein-like; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Endonuclease V, putative 5.819e-10
Internal
sp_v3.0_unigene67971 SustainPine v3.0 206
• AutoFact: DNA repair protein rad51, putative n=1 Tax=Ricinus communis RepID=B9RR28_RICCO 2.0e-18
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Rad51 DNA recombinase 1 1.208e-08
Putative C-terminus
sp_v3.0_unigene68088 SustainPine v3.0 302
• AutoFact: DNA photolyase, putative n=1 Tax=Ricinus communis RepID=B9SPQ6_RICCO 4.0e-38
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Cryptochrome DASH, chloroplastic/mitochondrial 1.826e-12
Internal
sp_v3.0_unigene68542 SustainPine v3.0 137
• AutoFact: Isoform 2 of Exonuclease 1 n=1 Tax=Arabidopsis thaliana RepID=Q8L6Z7-2 8.0e-08
• FL-Next: Isoform 2 of Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 0.0
Internal
sp_v3.0_unigene68699 SustainPine v3.0 236
• AutoFact: Meiotic recombination protein DMC1 homolog n=1 Tax=Glycine max RepID=DMC1_SOYBN 3.0e-20
• FL-Next: tr=RAD51-like protein; Pinus sylvestris (Scots pine). 0.0
• Sma3: Meiotic recombination protein DMC1 homolog 3.125e-12
C-terminus
sp_v3.0_unigene68735 SustainPine v3.0 253
• AutoFact: DNA repair helicase rad5,16, putative n=1 Tax=Ricinus communis RepID=B9STJ2_RICCO 2.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: DNA repair helicase rad5,16, putative 2.683e-07
Internal
sp_v3.0_unigene68773 SustainPine v3.0 245
• AutoFact: ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding protein [Arabidopsis thaliana] dbj|BAE98729.1| DNA repair protein-like [Arabidopsis thaliana] gb|AED95929.1| ATP binding / damaged DNA binding / nucleoside-triphosphatase/ n 2.0e-15
• FL-Next: tr=Putative uncharacterized protein; Ricinus communis (Castor bean). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain