Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA repair

Term: GO:0006281  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene50193 SustainPine v3.0 242
• AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SXG7_RICCO 1.0e-25
• FL-Next: sp=Geminivirus Rep-interacting motor protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene50443 SustainPine v3.0 188
• AutoFact: putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref|NP_001185050.1| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb|AAD30595.1|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb|AEE30046.1 9.0e-27
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene50617 SustainPine v3.0 230
• AutoFact: Unassigned protein 1.0e-08
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene50719 SustainPine v3.0 195
• AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 8.0e-20
• FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 2.911e-13
Internal
sp_v3.0_unigene51208 SustainPine v3.0 343
• AutoFact: DNA ligase 4 n=2 Tax=Arabidopsis RepID=DNLI4_ARATH 4.99997e-41
• FL-Next: sp=DNA ligase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene51899 SustainPine v3.0 339
• AutoFact: pfam06087, Tyr-DNA_phospho, Tyrosyl-DNA phosphodiesterase 2.0e-09
• FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene52012 SustainPine v3.0 212
• AutoFact: Repressor of silencing 1 n=1 Tax=Nicotiana tabacum RepID=A4PF88_TOBAC 8.0e-30
• FL-Next: Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME 0.0
• Sma3: Repressor of silencing 1 1.712e-08
Internal
sp_v3.0_unigene52119 SustainPine v3.0 384
• AutoFact: putative RAD50 DNA repair protein [Arabidopsis thaliana] 9.0e-13
• FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52240 SustainPine v3.0 455
• AutoFact: Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ricinus communis RepID=B9RY76_RICCO 1.0e-33
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene52289 SustainPine v3.0 372
• AutoFact: Probable histone-arginine methyltransferase CARM1 n=3 Tax=Oryza sativa RepID=CARM1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Protein arginine N-methyltransferase 3.137e-07
Internal
sp_v3.0_unigene52430 SustainPine v3.0 380
• AutoFact: Ribonucleoside-diphosphate reductase R2 (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q5YJM7_HYAOR 1.0e-39
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ribonucleotide reductase small subunit 2.381e-12
N-terminus
sp_v3.0_unigene52759 SustainPine v3.0 120
• AutoFact: FACT complex subunit SPT16 n=4 Tax=Camelineae RepID=SPT16_ARATH 4.0e-07
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Facilitates chromatin transcription complex subunit SPT16 2.05e-13
Internal
sp_v3.0_unigene52796 SustainPine v3.0 188
• AutoFact: deoxyribonuclease V [Arabidopsis thaliana] gb|ABN04826.1| At4g31150 [Arabidopsis thaliana] gb|AEE85866.1| deoxyribonuclease V [Arabidopsis thaliana] 1.0e-17
• FL-Next: tr=At4g31150; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Endonuclease V, putative 3.895e-10
Internal
sp_v3.0_unigene53184 SustainPine v3.0 348
• AutoFact: Serine/threonine-protein kinase ATR n=4 Tax=Oryza sativa RepID=ATR_ORYSJ 1.0e-38
• FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Serine/threonine-protein kinase ATR 1.251e-08
Internal
sp_v3.0_unigene53275 SustainPine v3.0 229
• AutoFact: DNA ligase n=1 Tax=Populus nigra RepID=Q0PCF8_POPNI 6.0e-31
• FL-Next: sp=Putative DNA ligase 4; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: DNA ligase 6.707e-10
Internal
sp_v3.0_unigene53782 SustainPine v3.0 490
• AutoFact: deetiolated 1-like protein [Solanum tuberosum] 5.60519e-45
• FL-Next: sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
• Sma3: Light-mediated development protein DET1 3.178e-14
Internal
sp_v3.0_unigene53825 SustainPine v3.0 182
• AutoFact: DNA photolyase, putative n=1 Tax=Ricinus communis RepID=B9RV05_RICCO 4.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: 6-4 photolyase 1.945e-09
Internal
sp_v3.0_unigene54034 SustainPine v3.0 321
• AutoFact: serine/threonine-protein kinase-like protein [Arabidopsis thaliana] sp|Q9SV05.1|CCR35_ARATH RecName: Full=Serine/threonine-protein kinase-like protein At3g51990; AltName: Full=CRINKLY 4-related kinase; Flags: Precursor emb|CAB41319.1| putative serine/thre 2.0e-20
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene54134 SustainPine v3.0 357
• AutoFact: DNA repair protein RAD51-like 2 [Arabidopsis thaliana] gb|AEC08140.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana] 1.0e-21
• FL-Next: sp=DNA repair protein RAD51 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene54253 SustainPine v3.0 463
• AutoFact: DNA damage-binding protein 1 n=5 Tax=core eudicotyledons RepID=DDB1_SOLCE 0.0
• FL-Next: sp=DNA damage-binding protein 1; cheesmanii). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain