Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA-dependent DNA replication initiation

Term: GO:0006270  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene147 SustainPine v3.0 2292
AutoFact: DNA polymerase n=2 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MMP0_ARALL 0.0
FL-Next: sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA polymerase 3.052e-14
C-terminus
sp_v3.0_unigene1893 SustainPine v3.0 3240
AutoFact: [L] COG1241 Predicted ATPase involved in replication control, Cdc46/Mcm family 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome undetermined scaffold_267, whole genome shotgun sequence 8.644e-07
Complete
sp_v3.0_unigene2023 SustainPine v3.0 1995
AutoFact: zf-primase domain containing protein 5.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2484 SustainPine v3.0 1298
AutoFact: DNA polymerase n=1 Tax=Populus trichocarpa RepID=B9HHA9_POPTR 0.0
FL-Next: sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA polymerase 5.732e-20
Internal
sp_v3.0_unigene3836 SustainPine v3.0 1606
AutoFact: cell division control protein 45 [Arabidopsis thaliana] dbj|BAB02068.1| CDC45 (cell division cycle 45) -like protein [Arabidopsis thaliana] emb|CAD43725.1| putative cell division cyle protein 45 [Arabidopsis thaliana] gb|AEE76979.1| cell division control 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene4122 SustainPine v3.0 3573
AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
FL-Next: tr=Os02g0797400 protein; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chromosome undetermined scaffold_155, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene6204 SustainPine v3.0 4065
AutoFact: DNA replication licensing factor MCM3 homolog 2 [Zea mays] sp|Q9SX04.1|MCM32_MAIZE RecName: Full=DNA replication licensing factor MCM3 homolog 2; AltName: Full=Replication origin activator 2; Short=ROA-2 gb|AAD48086.1|AF073330_1 replication origin activat 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Sma3: Minichromosome maintenance protein 3 2.202e-08
Misassembled
sp_v3.0_unigene6234 SustainPine v3.0 1282
AutoFact: GINS complex subunit 4 [Arabidopsis thaliana] gb|AAQ62407.1| At5g49010 [Arabidopsis thaliana] dbj|BAD94796.1| hypothetical protein [Arabidopsis thaliana] gb|AED95756.1| GINS complex subunit 4 [Arabidopsis thaliana] 0.0
FL-Next: tr=Uncharacterized protein; Oryza glaberrima (African rice). 0.0
Sma3: Chromosome chr5 scaffold_64, whole genome shotgun sequence 9.389e-06
Complete
sp_v3.0_unigene6757 SustainPine v3.0 3008
AutoFact: putative replication licensing factor MCM4 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene8950 SustainPine v3.0 1199
AutoFact: cell division control protein 45 [Arabidopsis thaliana] dbj|BAB02068.1| CDC45 (cell division cycle 45) -like protein [Arabidopsis thaliana] emb|CAD43725.1| putative cell division cyle protein 45 [Arabidopsis thaliana] gb|AEE76979.1| cell division control 4.99997e-41
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene9024 SustainPine v3.0 1649
AutoFact: GINS complex subunit 1 [Arabidopsis thaliana] gb|AAD55475.1|AC009322_15 Unknown protein [Arabidopsis thaliana] gb|AAQ65107.1| At1g80190 [Arabidopsis thaliana] dbj|BAD43315.1| At1g80190 [Arabidopsis thaliana] gb|AEE36368.1| GINS complex subunit 1 [Arabidop 0.0
FL-Next: tr=DNA replication complex GINS protein PSF1; Zea mays (Maize). 0.0
Complete
sp_v3.0_unigene11596 SustainPine v3.0 829
AutoFact: FAD-dependent oxidoreductase-like protein [Arabidopsis thaliana] gb|AAV63877.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07333.1| FAD-dependent oxidoreductase-like protein [Arabidopsis thaliana] 4.0e-30
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative N-terminus
sp_v3.0_unigene12103 SustainPine v3.0 2602
AutoFact: replication licensing factor MCM7 homologue [Zea mays] emb|CAC44902.1| replication licensing factor MCM7 homologue [Zea mays] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr7 scaffold_42, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene12614 SustainPine v3.0 1052
AutoFact: FAD-dependent oxidoreductase-like protein [Arabidopsis thaliana] gb|AAV63877.1| hypothetical protein [Arabidopsis thaliana] gb|AEC07333.1| FAD-dependent oxidoreductase-like protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Putative D-amino acid dehydrogenase 1.89e-09
C-terminus
sp_v3.0_unigene23925 SustainPine v3.0 1798
AutoFact: GINS complex subunit 1 [Arabidopsis thaliana] gb|AAD55475.1|AC009322_15 Unknown protein [Arabidopsis thaliana] gb|AAQ65107.1| At1g80190 [Arabidopsis thaliana] dbj|BAD43315.1| At1g80190 [Arabidopsis thaliana] gb|AEE36368.1| GINS complex subunit 1 [Arabidop 0.0
FL-Next: tr=DNA replication complex GINS protein PSF1; Zea mays (Maize). 0.0
Complete
sp_v3.0_unigene31308 SustainPine v3.0 706
AutoFact: DNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7SVW3_VITVI 1.0e-20
FL-Next: sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: DNA polymerase 2.179e-06
N-terminus
sp_v3.0_unigene44060 SustainPine v3.0 1281
AutoFact: DNA replication licensing factor MCM5 [Aspergillus niger CBS 513.88] emb|CAK44374.1| unnamed protein product [Aspergillus niger] 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 1; Zea mays (Maize). 0.0
Putative C-terminus
sp_v3.0_unigene49788 SustainPine v3.0 1315
AutoFact: cell division control protein 45 [Arabidopsis thaliana] dbj|BAB02068.1| CDC45 (cell division cycle 45) -like protein [Arabidopsis thaliana] emb|CAD43725.1| putative cell division cyle protein 45 [Arabidopsis thaliana] gb|AEE76979.1| cell division control 6.00036e-42
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene49855 SustainPine v3.0 2875
AutoFact: DNA replication licensing factor MCM3 homolog 2 [Zea mays] sp|Q9SX04.1|MCM32_MAIZE RecName: Full=DNA replication licensing factor MCM3 homolog 2; AltName: Full=Replication origin activator 2; Short=ROA-2 gb|AAD48086.1|AF073330_1 replication origin activat 0.0
FL-Next: sp=DNA replication licensing factor MCM3 homolog 3; Zea mays (Maize). 0.0
Sma3: Minichromosome maintenance protein 3 2.202e-08
Complete
sp_v3.0_unigene50055 SustainPine v3.0 401
AutoFact: DNA polymerase alpha catalytic subunit n=1 Tax=Arabidopsis thaliana RepID=F4K285_ARATH 1.0e-30
FL-Next: sp=DNA polymerase alpha catalytic subunit; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA polymerase alpha catalytic subunit 2.258e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain