Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: histone deacetylation

Term: GO:0016575  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene3232 SustainPine v3.0 1107
• AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 0.0
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein LSD1-LIKE 2 1.869e-08
C-terminus
sp_v3.0_unigene3506 SustainPine v3.0 2695
• AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene7164 SustainPine v3.0 2086
• AutoFact: Histone deacetylase n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TG19_PHYPA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Histone deacetylase 0.0
Complete
sp_v3.0_unigene18320 SustainPine v3.0 668
• AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 6.0e-34
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene18665 SustainPine v3.0 627
• AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 5.0e-34
• FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
N-terminus
sp_v3.0_unigene20459 SustainPine v3.0 1650
• AutoFact: Lysine-specific histone demethylase, putative n=1 Tax=Ricinus communis RepID=B9R844_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: SWIRM domain protein 2.541e-12
N-terminus
sp_v3.0_unigene21316 SustainPine v3.0 972
• AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene23404 SustainPine v3.0 2929
• AutoFact: flowering locus D [Arabidopsis thaliana] 0.0
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: SWIRM domain protein 1.919e-12
Complete
sp_v3.0_unigene26670 SustainPine v3.0 789
• AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene38750 SustainPine v3.0 1214
• AutoFact: WD-40 repeat family protein [Arabidopsis thaliana] dbj|BAB09017.1| unnamed protein product [Arabidopsis thaliana] gb|AAL15328.1| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb|AAN28871.1| At5g67320/K8K14_4 [Arabidopsis thaliana] gb|AED98328.1| WD-40 repeat f 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene44968 SustainPine v3.0 147
• AutoFact: Amine oxidase, putative n=1 Tax=Ricinus communis RepID=B9SUC7_RICCO 4.0e-08
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Protein LSD1-LIKE 3 5.331e-09
Internal
sp_v3.0_unigene45685 SustainPine v3.0 141
• AutoFact: Flavin-containing amine oxidase domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SUY7_RICCO 1.0e-14
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 1; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein LSD1-LIKE 2 1.208e-08
Internal
sp_v3.0_unigene52961 SustainPine v3.0 244
• AutoFact: Amine oxidase, putative n=1 Tax=Ricinus communis RepID=B9SUC7_RICCO 2.0e-18
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein LSD1-LIKE 2 1.284e-08
Internal
sp_v3.0_unigene60787 SustainPine v3.0 237
• AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 2.0e-15
• FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histone deacetylase 5.985e-09
Internal
sp_v3.0_unigene69573 SustainPine v3.0 183
• AutoFact: Histone deacetylase n=2 Tax=Populus trichocarpa RepID=B9MZ37_POPTR 4.0e-17
• FL-Next: sp=Histone deacetylase 19; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Histone deacetylase 4.747e-26
Internal
sp_v3.0_unigene73424 SustainPine v3.0 181
• AutoFact: Unassigned protein
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
C-terminus
sp_v3.0_unigene93905 SustainPine v3.0 621
• AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 5.00264e-43
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Flavin-containing amine oxidase domain-containing protein, putative 3.922e-09
Putative C-terminus
sp_v3.0_unigene94831 SustainPine v3.0 455
• AutoFact: flowering locus D [Arabidopsis thaliana] 4.0e-09
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Protein LSD1-LIKE 1 3.168e-09
Internal
sp_v3.0_unigene103859 SustainPine v3.0 427
• AutoFact: Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ 0.0
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). 0.0
• Sma3: Protein LSD1-LIKE 2 1.869e-08
Internal
sp_v3.0_unigene105495 SustainPine v3.0 207
• AutoFact: pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase 9.0e-15
• FL-Next: sp=Lysine-specific histone demethylase 1 homolog 3; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: Protein LSD1-LIKE 2 1.514e-08
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain