Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Poly(A)-specific ribonuclease.

Term: EC:3.1.13.4  Help

Source: EC from Sma3

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene1686 SustainPine v3.0 2984
• AutoFact: carbon catabolite repressor protein 4-like 1 [Arabidopsis thaliana] sp|Q8W0Z9.1|CCR4A_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 1; Short=CCR4 homolog 1 gb|AAL58932.1|AF462845_1 AT3g58560/F14P22_150 [Arabidopsis thaliana] gb|AAM9136 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene3261 SustainPine v3.0 2852
• AutoFact: carbon catabolite repressor protein 4-like 2 [Arabidopsis thaliana] sp|Q9M2F8.2|CCR4B_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 2; Short=CCR4 homolog 2 gb|AEE79801.1| carbon catabolite repressor protein 4-like 2 [Arabidopsis thalia 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene4482 SustainPine v3.0 1024
• AutoFact: Chromatin assembly factor 1 (Fragment) n=1 Tax=Pinus taeda RepID=B0ZQ72_PINTA 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccr4-associated factor, putative 7.563e-15
Putative N-terminus
sp_v3.0_unigene6206 SustainPine v3.0 2176
• AutoFact: Carbon catabolite repressor protein 4 homolog 5 n=2 Tax=Arabidopsis RepID=CCR4E_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Chromosome chr17 scaffold_16, whole genome shotgun sequence 6.946e-06
Complete
sp_v3.0_unigene7999 SustainPine v3.0 1556
• AutoFact: [A] COG5239 mRNA deadenylase, exonuclease subunit and related nucleases 3.0e-28
• FL-Next: Isoform 2 of Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 0.0
Complete
sp_v3.0_unigene9296 SustainPine v3.0 1648
• AutoFact: putative CCR4-associated factor 1-7 [Arabidopsis thaliana] sp|Q9SKZ2.2|CAF1G_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 7 gb|AAK93623.1| putative CCR4-associated factor [Arabidopsis thaliana] gb|AAD15397.2| putative CCR4-associated fact 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccr4-associated factor, putative 6.261e-19
Complete
sp_v3.0_unigene30265 SustainPine v3.0 857
• AutoFact: putative CCR4-associated factor 1-7 [Arabidopsis thaliana] sp|Q9SKZ2.2|CAF1G_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 7 gb|AAK93623.1| putative CCR4-associated factor [Arabidopsis thaliana] gb|AAD15397.2| putative CCR4-associated fact 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccr4-associated factor, putative 5.114e-19
C-terminus
sp_v3.0_unigene41219 SustainPine v3.0 948
• AutoFact: Unassigned protein
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene68848 SustainPine v3.0 139
• AutoFact: Carbon catabolite repressor protein 4 homolog 2 n=2 Tax=Arabidopsis RepID=CCR4B_ARATH 3.0e-13
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene68983 SustainPine v3.0 360
• AutoFact: gpm725; LOC100279626; K12603 CCR4-NOT transcription complex subunit 6 [EC:3.1.-.-] 5.0e-19
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative N-terminus
sp_v3.0_unigene70064 SustainPine v3.0 492
• AutoFact: gpm725; LOC100279626; K12603 CCR4-NOT transcription complex subunit 6 [EC:3.1.-.-] 4.0e-10
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene73638 SustainPine v3.0 273
• AutoFact: carbon catabolite repressor protein 4-like 1 [Arabidopsis thaliana] sp|Q8W0Z9.1|CCR4A_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 1; Short=CCR4 homolog 1 gb|AAL58932.1|AF462845_1 AT3g58560/F14P22_150 [Arabidopsis thaliana] gb|AAM9136 1.0e-14
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene81781 SustainPine v3.0 114
• AutoFact: carbon catabolite repressor protein 4-like 2 [Arabidopsis thaliana] sp|Q9M2F8.2|CCR4B_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 2; Short=CCR4 homolog 2 gb|AEE79801.1| carbon catabolite repressor protein 4-like 2 [Arabidopsis thalia 7.0e-10
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene126987 SustainPine v3.0 1029
• AutoFact: Pathogenesis-related protein 10 n=1 Tax=Pinus pinaster RepID=D9IWE1_PINPS 0.0
• FL-Next: tr=Pathogenesis-related protein 10; Pinus pinaster (Maritime pine). 0.0
• Sma3: Putative intracellular pathogenesis-related protein 2.995e-17
Complete
sp_v3.0_unigene134869 SustainPine v3.0 264
• AutoFact: carbon catabolite repressor protein 4-like 2 [Arabidopsis thaliana] sp|Q9M2F8.2|CCR4B_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 2; Short=CCR4 homolog 2 gb|AEE79801.1| carbon catabolite repressor protein 4-like 2 [Arabidopsis thalia 5.0e-22
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene137179 SustainPine v3.0 201
• AutoFact: protein of endonuclease / exonuclease / phosphatase family; K12603 CCR4-NOT transcription complex subunit 6 [EC:3.1.-.-] 4.0e-15
• FL-Next: sp=Carbon catabolite repressor protein 4 homolog 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene141722 SustainPine v3.0 202
• AutoFact: putative CCR4-associated factor 1-7 [Arabidopsis thaliana] sp|Q9SKZ2.2|CAF1G_ARATH RecName: Full=Probable CCR4-associated factor 1 homolog 7 gb|AAK93623.1| putative CCR4-associated factor [Arabidopsis thaliana] gb|AAD15397.2| putative CCR4-associated fact 7.0e-13
• FL-Next: sp=Probable CCR4-associated factor 1 homolog 7; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: CCR4-NOT transcription complex subunit 7 3.922e-09
Internal
sp_v3.0_unigene145965 SustainPine v3.0 307
• AutoFact: putative CCR4-NOT transcription complex subunit 7 [Oryza sativa Japonica Group] dbj|BAD19282.1| putative CCR4-NOT transcription complex subunit 7 [Oryza sativa Japonica Group] 1.0e-11
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Ccr4-associated factor, putative 1.117e-11
Putative N-terminus
sp_v3.0_unigene158417 SustainPine v3.0 173
• AutoFact: polyA tail-shortening ribonuclease, probable [Ostreococcus lucimarinus CCE9901] gb|ABO94497.1| polyA tail-shortening ribonuclease, probable [Ostreococcus lucimarinus CCE9901] 2.0e-16
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: CCR4-NOT transcription complex subunit 7 6.271e-09
Internal
sp_v3.0_unigene183843 SustainPine v3.0 503
• AutoFact: [A] COG5239 mRNA deadenylase, exonuclease subunit and related nucleases 6.0e-05
• FL-Next: Isoform 5 of Carbon catabolite repressor protein 4 homolog 4 OS=Arabidopsis thaliana GN=CCR4-4 0.0
Putative N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain