Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nuclear pore

Term: GO:0005643  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene120080 SustainPine v3.0 264
AutoFact: putative Ran binding protein 11-like [Oryza sativa Japonica Group] 1.0e-15
FL-Next: tr=T16O11.8 protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene121312 SustainPine v3.0 339
AutoFact: importin alpha 2 [Capsicum annuum] 7.0e-13
FL-Next: sp=Importin subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Importin alpha-like protein 9.071e-15
N-terminus
sp_v3.0_unigene122409 SustainPine v3.0 384
AutoFact: armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gb|AEE75940.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] 3.0e-05
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene124536 SustainPine v3.0 80
AutoFact: Unassigned protein
FL-Next: tr=T16O11.8 protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene125223 SustainPine v3.0 279
AutoFact: Unassigned protein
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Internal
sp_v3.0_unigene126075 SustainPine v3.0 918
AutoFact: pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107 5.0e-07
FL-Next: tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress). 0.0
Internal
sp_v3.0_unigene128695 SustainPine v3.0 610
AutoFact: Importin alpha-like protein n=5 Tax=Arabidopsis RepID=O49600_ARATH 7.0e-14
FL-Next: sp=Importin subunit alpha-1a; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Importin alpha, putative 1.367e-15
Putative N-terminus
sp_v3.0_unigene129053 SustainPine v3.0 486
AutoFact: HASTY [Arabidopsis thaliana] 0.0
FL-Next: sp=Protein HASTY 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene130709 SustainPine v3.0 270
AutoFact: HEAT repeat, putative n=1 Tax=Oryza sativa Japonica Group RepID=Q53RB7_ORYSJ 1.0e-35
FL-Next: tr=HEAT repeat family protein, expressed; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Importin beta-3, putative 9.178e-09
Internal
sp_v3.0_unigene132171 SustainPine v3.0 473
AutoFact: armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gb|AAK59549.1| unknown protein [Arabidopsis thaliana] gb|AAK93760.1| unknown protein [Arabidopsis thaliana] gb|AED92752.1| armadillo/beta-catenin-like repeat-containing protein [ 2.0e-08
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-3, putative 6.498e-09
C-terminus
sp_v3.0_unigene135429 SustainPine v3.0 251
AutoFact: armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gb|AEE79861.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] 6.0e-19
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene136430 SustainPine v3.0 331
AutoFact: nuclear transportin [Triticum aestivum] 3.0e-26
FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
Putative N-terminus
sp_v3.0_unigene137406 SustainPine v3.0 350
Sma3: Nucleoporin 98 6.335e-06
coding
sp_v3.0_unigene138306 SustainPine v3.0 176
AutoFact: F10B6.25 n=2 Tax=Arabidopsis thaliana RepID=Q9LQU6_ARATH 4.0e-05
FL-Next: tr=Nuclear pore complex protein Nup155; Medicago truncatula (Barrel medic) (Medicago tribuloides). 0.0
Internal
sp_v3.0_unigene139456 SustainPine v3.0 422
AutoFact: Nucleoporin autopeptidase [Arabidopsis thaliana] ref|NP_001031018.1| Nucleoporin autopeptidase [Arabidopsis thaliana] gb|AAL84948.1| At1g10390/F14N23_29 [Arabidopsis thaliana] gb|AAO23595.1| At1g10390/F14N23_29 [Arabidopsis thaliana] dbj|BAE99032.1| hypot 9.0e-11
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
N-terminus
sp_v3.0_unigene140980 SustainPine v3.0 381
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-3, putative 6.913e-09
C-terminus
sp_v3.0_unigene141168 SustainPine v3.0 341
AutoFact: importin alpha 1 [Capsicum annuum] 1.0e-20
FL-Next: sp=Importin subunit alpha; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Importin alpha, putative 4.754e-18
Internal
sp_v3.0_unigene142369 SustainPine v3.0 945
AutoFact: importin [Oryza sativa] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin alpha, putative 4.717e-22
Internal
sp_v3.0_unigene142905 SustainPine v3.0 314
AutoFact: Ran-binding protein 1-c [Arabidopsis thaliana] sp|P92985.1|RBP1C_ARATH RecName: Full=Ran-binding protein 1 homolog c gb|AAB38776.1| Ran binding protein 1 homolog [Arabidopsis thaliana] gb|ABD94080.1| At5g58590 [Arabidopsis thaliana] gb|AED97073.1| Ran-bin 8.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Ran-binding protein 1 4.911e-21
Putative N-terminus
sp_v3.0_unigene147997 SustainPine v3.0 487
AutoFact: Integrase n=2 Tax=Beta vulgaris RepID=A2I5F8_BETVU 4.0e-31
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Retrotransposon protein, putative, unclassified 8.48e-28
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain