Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: nuclear pore

Term: GO:0005643  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene164 SustainPine v3.0 4510
AutoFact: nucleoporin [Lotus japonicus] emb|CAI64811.1| nucleoporin [Lotus japonicus] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Complete
sp_v3.0_unigene230 SustainPine v3.0 4139
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-3, putative 1.529e-08
Complete
sp_v3.0_unigene845 SustainPine v3.0 2956
AutoFact: armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] gb|AEE75940.1| armadillo/beta-catenin-like repeats-containing protein [Arabidopsis thaliana] 0.0
FL-Next: sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGD8 1.091e-08
Putative Complete
sp_v3.0_unigene1302 SustainPine v3.0 2728
AutoFact: Nucleoporin interacting component; Protein prenyltransferase [Medicago truncatula] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene1851 SustainPine v3.0 3385
AutoFact: Importin, putative n=1 Tax=Ricinus communis RepID=B9SWY3_RICCO 0.0
FL-Next: tr=Importin, putative; Ricinus communis (Castor bean). 0.0
C-terminus
sp_v3.0_unigene2007 SustainPine v3.0 3104
AutoFact: kinesin 3 [Arabidopsis thaliana] sp|P46875.1|ATK3_ARATH RecName: Full=Kinesin-3; AltName: Full=Kinesin-like protein C dbj|BAA04674.1| heavy chain polypeptide of kinesin-like protein [Arabidopsis thaliana] gb|AAO24588.1| At5g54670 [Arabidopsis thaliana] db 0.0
FL-Next: sp=Kinesin-3; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Kinesin heavy chain, putative 2.504e-15
Complete
sp_v3.0_unigene2297 SustainPine v3.0 2933
AutoFact: structural constituent of nuclear pore [Arabidopsis thaliana] gb|AAM91808.1| unknown protein [Arabidopsis thaliana] gb|AEC10495.1| structural constituent of nuclear pore [Arabidopsis thaliana] 0.0
FL-Next: tr=Predicted protein; subsp. trichocarpa). 0.0
Putative Complete
sp_v3.0_unigene2434 SustainPine v3.0 3158
AutoFact: Nuclear transport receptor exportin 4 (importin beta superfamily) (ISS) [Ostreococcus tauri] emb|CAL57664.1| Nuclear transport receptor exportin 4 (importin beta superfamily) (ISS) [Ostreococcus tauri] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene2935 SustainPine v3.0 4364
AutoFact: exportin 1A [Arabidopsis thaliana] emb|CAB56597.1| Exportin1 (XPO1) protein [Arabidopsis thaliana] emb|CAB89280.1| Exportin1 (XPO1) protein [Arabidopsis thaliana] emb|CAC01715.1| Exportin1 (XPO1) protein [Arabidopsis thaliana] gb|AAL07205.1| putative expo 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene3077 SustainPine v3.0 2930
AutoFact: putative nucleoporin PRECOZ [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene3590 SustainPine v3.0 638
AutoFact: Cwf_Cwc_15 multi-domain protein 2.0e-08
coding
sp_v3.0_unigene3717 SustainPine v3.0 3166
AutoFact: armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] dbj|BAB09724.1| importin beta [Arabidopsis thaliana] gb|AED96362.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-1, putative 5.391e-13
C-terminus
sp_v3.0_unigene4152 SustainPine v3.0 1015
AutoFact: Nucleoporin autopeptidase [Arabidopsis thaliana] ref|NP_001031018.1| Nucleoporin autopeptidase [Arabidopsis thaliana] gb|AAL84948.1| At1g10390/F14N23_29 [Arabidopsis thaliana] gb|AAO23595.1| At1g10390/F14N23_29 [Arabidopsis thaliana] dbj|BAE99032.1| hypot 4.0e-23
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Nucleoporin autopeptidase family protein, expressed 1.318e-09
Internal
sp_v3.0_unigene4786 SustainPine v3.0 3565
AutoFact: Importin-alpha re-exporter, putative n=1 Tax=Ricinus communis RepID=B9SBF8_RICCO 0.0
FL-Next: sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene4974 SustainPine v3.0 2436
AutoFact: kinesin-related protein [Gossypium hirsutum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Kinesin-like protein 5.996e-20
C-terminus
sp_v3.0_unigene5324 SustainPine v3.0 2137
AutoFact: RecName: Full=Importin subunit alpha; AltName: Full=Karyopherin subunit alpha; Short=KAP alpha gb|AAC23722.1| importin alpha [Solanum lycopersicum] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin alpha, putative 8.841e-18
Complete
sp_v3.0_unigene5348 SustainPine v3.0 3019
AutoFact: Importin-7, putative n=3 Tax=rosids RepID=B9SP38_RICCO 0.0
FL-Next: sp=Exportin-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr5 scaffold_67, whole genome shotgun sequence 0.0
N-terminus
sp_v3.0_unigene5362 SustainPine v3.0 4351
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-3, putative 2.321e-08
Complete
sp_v3.0_unigene5364 SustainPine v3.0 2155
AutoFact: Nup84_Nup100 domain containing protein 7.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene6140 SustainPine v3.0 3011
AutoFact: armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] dbj|BAB09724.1| importin beta [Arabidopsis thaliana] gb|AED96362.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Importin beta-1, putative 6.528e-13
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain