Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: tRNA processing

Term: GO:0008033  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene245 SustainPine v3.0 1743
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 4.285e-27
Putative C-terminus
sp_v3.0_unigene321 SustainPine v3.0 2895
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: YT521-B-like family protein, expressed 4.162e-11
Complete
sp_v3.0_unigene598 SustainPine v3.0 2063
AutoFact: phenylalanyl-tRNA synthetase [Arabidopsis thaliana] sp|Q94K73.1|SYFM_ARATH RecName: Full=Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial; AltName: Full=Phenylalanine--tRNA ligase; Short=PheRS; Flags: Precursor gb|AAK44062.1|AF370247_1 putative p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_80, whole genome shotgun sequence 3.029e-07
Putative Complete
sp_v3.0_unigene1049 SustainPine v3.0 2374
AutoFact: RecName: Full=tRNA-dihydrouridine synthase 3-like; AltName: Full=Zinc finger CCCH domain-containing protein 50; Short=AtC3H50 emb|CAB38623.1| putative protein [Arabidopsis thaliana] emb|CAB80552.1| putative protein [Arabidopsis thaliana] 0.0
FL-Next: sp=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: tRNA-dihydrouridine synthase 3-like 6.743e-09
C-terminus
sp_v3.0_unigene1867 SustainPine v3.0 2649
AutoFact: FMN-linked oxidoreductase-like protein protein n=5 Tax=Arabidopsis RepID=Q8H128_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
Complete
sp_v3.0_unigene2239 SustainPine v3.0 1494
AutoFact: ribonuclease P-like protein [Arabidopsis thaliana] gb|AAC64308.2| expressed protein [Arabidopsis thaliana] gb|AAM63258.1| unknown [Arabidopsis thaliana] gb|AEC10224.1| ribonuclease P-like protein [Arabidopsis thaliana] 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene2631 SustainPine v3.0 3138
AutoFact: cytochrome P450, putative (EC:1.6.2.4) 0.0
FL-Next: sp=tRNA wybutosine-synthesizing protein 1 homolog; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: tRNA wybutosine-synthesizing protein 1 homolog 7.149e-09
Complete
sp_v3.0_unigene2741 SustainPine v3.0 1861
AutoFact: cytoplasmic tRNA 2-thiolation protein 1 [Arabidopsis thaliana] sp|O64862.2|CTU1_ARATH RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; AltName: Full=Cytoplasmic tRNA adenylyltransferase 1 dbj|BAC41934.1| unknown protein [Arabidopsis thaliana] gb|AAP 0.0
FL-Next: sp=Cytoplasmic tRNA 2-thiolation protein 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr18 scaffold_1, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene3495 SustainPine v3.0 2667
AutoFact: tRNA pseudouridine synthase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD2_CUCME 0.0
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 3.099e-12
Putative Complete
sp_v3.0_unigene4149 SustainPine v3.0 543
AutoFact: Pseudouridine synthase n=1 Tax=Ricinus communis RepID=B9RVG5_RICCO 1.99993e-41
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 2.528e-06
Putative C-terminus
sp_v3.0_unigene4323 SustainPine v3.0 518
AutoFact: tRNA wybutosine-synthesizing protein 2/3/4 n=1 Tax=Oryza sativa Japonica Group RepID=TYW23_ORYSJ 4.0e-14
FL-Next: sp=tRNA wybutosine-synthesizing protein 2/3/4; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: tRNA wybutosine-synthesizing protein 3 homolog 1.318e-09
Putative C-terminus
sp_v3.0_unigene4501 SustainPine v3.0 424
AutoFact: ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gb|AED97261.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] 9.0e-35
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Similarity to RNaseP protein p30 7.797e-06
Internal
sp_v3.0_unigene5902 SustainPine v3.0 1857
AutoFact: tRNA(Ile)-lysidine synthetase [Synechococcus sp. JA-3-3Ab] sp|Q2JRN8.1|TILS_SYNJA RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gb|ABD00708.1| tRNA(Ile)-lysidine s 1.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: tRNA(Ile)-lysidine synthase, chloroplastic 8.22e-15
Complete
sp_v3.0_unigene6313 SustainPine v3.0 2790
AutoFact: putative N2,N2-dimethylguanine tRNA methyltransferase [Arabidopsis thaliana] 0.0
FL-Next: sp=Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: N-dimethylguanosine tRNA methyltransferase, putative, expressed 5.523e-09
Complete
sp_v3.0_unigene6412 SustainPine v3.0 2120
AutoFact: putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Adenylate isopentenyltransferase 0.0
Complete
sp_v3.0_unigene6535 SustainPine v3.0 1346
AutoFact: methyltransferase [Arabidopsis thaliana] gb|AEE82089.1| methyltransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene6639 SustainPine v3.0 1780
AutoFact: tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana] dbj|BAB10956.1| unnamed protein product [Arabidopsis thaliana] gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana] gb|AED98315.1| tRNA-dihy 0.0
FL-Next: tr=Putative uncharacterized protein Sb10g029830; Sorghum bicolor (Sorghum) (Sorghum vulgare). 0.0
Complete
sp_v3.0_unigene6831 SustainPine v3.0 1910
AutoFact: ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gb|AED97261.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] 7.0e-22
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Putative C-terminus
sp_v3.0_unigene6910 SustainPine v3.0 1393
AutoFact: phenylalanyl-tRNA synthetase [Arabidopsis thaliana] sp|Q94K73.1|SYFM_ARATH RecName: Full=Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial; AltName: Full=Phenylalanine--tRNA ligase; Short=PheRS; Flags: Precursor gb|AAK44062.1|AF370247_1 putative p 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome undetermined scaffold_80, whole genome shotgun sequence 3.029e-07
C-terminus
sp_v3.0_unigene7136 SustainPine v3.0 2147
AutoFact: tRNA pseudouridine synthase family protein n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD2_CUCME 0.0
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 3.099e-12
C-terminus

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain