Sustainpine_db
HomeAssembliesBLASTSearchInstitutions

Assembly Name: SustainPine v3.0

Name: tRNA processing

Term: GO:0008033  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene110676 SustainPine v3.0 541
• AutoFact: Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9ZQE9_ARATH 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 7.175e-31
Internal
sp_v3.0_unigene110720 SustainPine v3.0 189
• AutoFact: Maturase K (Fragment) n=1 Tax=Pinus thunbergii RepID=E5KG06_PINTH 2.0e-28
• FL-Next: sp=Maturase K; Pinus caribaea var. caribaea. Plastid; Chloroplast. 0.0
• Sma3: Maturase K 8.009e-06
Internal
sp_v3.0_unigene111377 SustainPine v3.0 370
• AutoFact: Met-10+ like family protein / kelch repeat-containing protein 8.0e-27
• FL-Next: sp=tRNA wybutosine-synthesizing protein 2/3/4; Arabidopsis thaliana (Mouse-ear cress). 0.0
• Sma3: tRNA wybutosine-synthesizing protein 3 homolog 1.818e-09
Internal
sp_v3.0_unigene111546 SustainPine v3.0 287
• AutoFact: Pseudouridine synthase n=1 Tax=Ricinus communis RepID=B9SM90_RICCO 2.0e-26
• FL-Next: sp=Pseudouridine synthase; Ricinus communis (Castor bean). 0.0
• Sma3: Pseudouridylate synthase 1.049e-19
Internal
sp_v3.0_unigene114162 SustainPine v3.0 453
• AutoFact: Unassigned protein
• FL-Next: sp=tRNA wybutosine-synthesizing protein 2/3/4; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene114312 SustainPine v3.0 484
• AutoFact: methyltransferase [Arabidopsis thaliana] gb|AEE82089.1| methyltransferase [Arabidopsis thaliana] 3.0e-11
• FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Putative N-terminus
sp_v3.0_unigene121120 SustainPine v3.0 827
• AutoFact: Carotenoid isomerase n=1 Tax=Ipomoea sp. Kenyan RepID=D0FZ29_9ASTE 1.4013e-45
• FL-Next: sp=Prolycopene isomerase 2, chloroplastic; Oncidium hybrid cultivar (Orchid). 0.0
• Sma3: CrtISO 1.354e-12
N-terminus
sp_v3.0_unigene121695 SustainPine v3.0 222
• AutoFact: [J] COG0042 tRNA-dihydrouridine synthase 3.0e-09
• FL-Next: tr=Putative uncharacterized protein; Oryza sativa subsp. japonica (Rice). 0.0
Internal
sp_v3.0_unigene122445 SustainPine v3.0 109
• AutoFact: Maturase K n=58 Tax=Pinus RepID=MATK_PINCE 1.0e-06
• FL-Next: sp=Maturase K 1; Pinus morrisonicola. Plastid; Chloroplast. 0.0
• Sma3: Intron maturase 1.344e-06
Internal
sp_v3.0_unigene124437 SustainPine v3.0 220
• AutoFact: Pseudouridine synthase n=1 Tax=Ricinus communis RepID=B9SM90_RICCO 4.0e-21
• FL-Next: sp=Pseudouridine synthase; Ricinus communis (Castor bean). 0.0
• Sma3: Pseudouridylate synthase 4.205e-10
Internal
sp_v3.0_unigene127750 SustainPine v3.0 698
• AutoFact: Copia-type reverse transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9M197_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 1.302e-10
Putative C-terminus
sp_v3.0_unigene130461 SustainPine v3.0 481
• AutoFact: Squalene monooxygenase n=3 Tax=Zea mays RepID=B6U6N2_MAIZE 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Squalene monooxygenase, putative 5.975e-26
Internal
sp_v3.0_unigene131168 SustainPine v3.0 381
• AutoFact: [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 7.0e-14
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene133660 SustainPine v3.0 481
• AutoFact: All-trans-retinol 13,14-reductase precursor, putative (EC:1.3.99.23) 2.0e-40
• FL-Next: tr=Uncharacterized protein; Zea mays (Maize). 0.0
• Sma3: Carotenoid isomerase 7.35e-11
Complete
sp_v3.0_unigene138361 SustainPine v3.0 324
• AutoFact: putative tRNA pseudouridine synthase [Arabidopsis thaliana] sp|O22928.1|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName: Full=tRNA pseudouridylate synthase; AltName: Full=tRNA-uridine isomerase gb|AAC16945.1| putative pseudouridine 2.0e-11
• FL-Next: sp=Putative tRNA pseudouridine synthase; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene143864 SustainPine v3.0 659
• AutoFact: Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pyridoxine biosynthesis protein 1.672e-15
C-terminus
sp_v3.0_unigene148647 SustainPine v3.0 342
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q338J6_ORYSJ 1.0e-28
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 2.797e-15
Putative C-terminus
sp_v3.0_unigene148739 SustainPine v3.0 322
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 7.0e-29
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Copia-type polyprotein 2.077e-11
Internal
sp_v3.0_unigene148848 SustainPine v3.0 258
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 4.99983e-42
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 6.758e-23
Internal
sp_v3.0_unigene149040 SustainPine v3.0 332
• AutoFact: T26F17.17 n=1 Tax=Arabidopsis thaliana RepID=Q9SFE1_ARATH 2.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.753e-14
Internal

Go to Annotations List

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain