Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: tRNA processing

Term: GO:0008033  Help

Source: GO from Sma3

Ontology: Biological Process

UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
 Full-Length
sp_v3.0_unigene29167 SustainPine v3.0 2249
• AutoFact: Pseudouridine synthase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TFS0_VITVI 0.0
• FL-Next: sp=Pseudouridine synthase; Vitis vinifera (Grape). 0.0
• Sma3: Pseudouridylate synthase 1.486e-25
Putative Complete
sp_v3.0_unigene30862 SustainPine v3.0 1012
• AutoFact: putative ribonuclease P/MRP protein subunit POP5 [Arabidopsis thaliana] sp|Q6AWV1.1|POP5_ARATH RecName: Full=Probable ribonuclease P/MRP protein subunit POP5; AltName: Full=Protein EMBRYO DEFECTIVE 1687 gb|AAT85743.1| At1g04635 [Arabidopsis thaliana] gb|A 1.0e-35
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene32800 SustainPine v3.0 375
• AutoFact: putative ribonuclease P/MRP protein subunit POP5 [Arabidopsis thaliana] sp|Q6AWV1.1|POP5_ARATH RecName: Full=Probable ribonuclease P/MRP protein subunit POP5; AltName: Full=Protein EMBRYO DEFECTIVE 1687 gb|AAT85743.1| At1g04635 [Arabidopsis thaliana] gb|A 6.0e-18
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene33650 SustainPine v3.0 786
• AutoFact: Unassigned protein
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 4.844e-18
C-terminus
sp_v3.0_unigene33659 SustainPine v3.0 1080
• AutoFact: Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB 8.99999e-40
• FL-Next: tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca). 0.0
• Sma3: Retrotransposon protein, putative, unclassified 1.805e-12
C-terminus
sp_v3.0_unigene33751 SustainPine v3.0 1131
• AutoFact: Copia-type polyprotein, putative n=4 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.24e-11
Putative C-terminus
sp_v3.0_unigene33950 SustainPine v3.0 1026
• AutoFact: Copia-type polyprotein, putative n=1 Tax=Arabidopsis thaliana RepID=Q9C536_ARATH 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.444e-26
Putative C-terminus
sp_v3.0_unigene35002 SustainPine v3.0 980
• AutoFact: tRNA-dihydrouridine synthase n=1 Tax=Ricinus communis RepID=B9SSD6_RICCO 0.0
• FL-Next: sp=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative C-terminus
sp_v3.0_unigene35603 SustainPine v3.0 1247
• AutoFact: glucose-inhibited division A family protein [Musa balbisiana] 3.0e-31
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: ER6 protein 8.081e-09
Complete
sp_v3.0_unigene35647 SustainPine v3.0 1658
• AutoFact: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RIE1_RICCO 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene36099 SustainPine v3.0 841
• AutoFact: Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI 2.8026e-45
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pyridoxine biosynthesis protein 1.601e-15
C-terminus
sp_v3.0_unigene36228 SustainPine v3.0 547
• AutoFact: Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH 8.0e-36
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 2.08e-14
Putative C-terminus
sp_v3.0_unigene37040 SustainPine v3.0 957
• AutoFact: Maturase K n=364 Tax=Pinaceae RepID=MATK_PICEN 0.0
• FL-Next: sp=Maturase K; Pinus canariensis. Plastid; Chloroplast. 0.0
• Sma3: Intron maturase 1.556e-09
N-terminus
sp_v3.0_unigene46173 SustainPine v3.0 482
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 0.0
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 1.905e-16
C-terminus
sp_v3.0_unigene46591 SustainPine v3.0 352
• AutoFact: Glucose inhibited division protein A, putative n=1 Tax=Ricinus communis RepID=B9RRF2_RICCO 9.0e-13
• FL-Next: tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene46789 SustainPine v3.0 329
• AutoFact: Reverse transcriptase (Fragment) n=1 Tax=Sciadopitys verticillata RepID=Q4JQ38_SCIVE 1.0e-32
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 4.483e-34
Internal
sp_v3.0_unigene47341 SustainPine v3.0 216
• AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 6.0e-28
• FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pseudouridylate synthase 2.436e-13
Internal
sp_v3.0_unigene47489 SustainPine v3.0 489
• AutoFact: Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI 2.0e-22
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Pyridoxine biosynthesis protein 1.532e-15
Complete
sp_v3.0_unigene47780 SustainPine v3.0 722
• AutoFact: Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2QLK1_ORYSJ 0.0
• FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
• Sma3: Retrotransposon protein, putative, Ty1-copia subclass 1.921e-17
Internal
sp_v3.0_unigene48031 SustainPine v3.0 328
• AutoFact: Glucose inhibited division protein A, putative n=1 Tax=Ricinus communis RepID=B9RRF2_RICCO 2.8026e-45
• FL-Next: tr=Glucose inhibited division protein A, putative; Ricinus communis (Castor bean). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain