Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: tRNA processing

Term: GO:0008033  Help

Source: GO from Sma3

Ontology: Biological Process


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene7692 SustainPine v3.0 1906
AutoFact: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SE49_RICCO 0.0
FL-Next: sp=tRNA dimethylallyltransferase 9; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Isopentenyl transferase 4.86e-11
Complete
sp_v3.0_unigene8127 SustainPine v3.0 1461
AutoFact: Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pyridoxine biosynthesis protein 1.796e-15
Complete
sp_v3.0_unigene8327 SustainPine v3.0 694
AutoFact: N(2),N(2)-dimethylguanosine tRNA methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SAN0_RICCO 0.0
FL-Next: tr=N(2),N(2)-dimethylguanosine tRNA methyltransferase, putative; Ricinus communis (Castor bean). 0.0
N-terminus
sp_v3.0_unigene9315 SustainPine v3.0 1723
AutoFact: Glucose-inhibited division family A protein n=2 Tax=Arabidopsis RepID=Q9SHS2_ARATH 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Glucose inhibited division protein A, putative 2.121e-09
C-terminus
sp_v3.0_unigene9500 SustainPine v3.0 857
AutoFact: N2,N2-dimethylguanosine tRNA methyltransferase [Arabidopsis thaliana] emb|CAB87432.1| N2, N2-dimethylguanosine tRNA methyltransferases-like protein [Arabidopsis thaliana] gb|AEE79510.1| N2,N2-dimethylguanosine tRNA methyltransferase [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
C-terminus
sp_v3.0_unigene13157 SustainPine v3.0 358
AutoFact: Ribonuclease z, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9R958_RICCO 5.0e-14
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear ribonuclease Z 5.096e-18
Internal
sp_v3.0_unigene13956 SustainPine v3.0 1983
AutoFact: Squalene monooxygenase n=3 Tax=Zea mays RepID=B6U6N2_MAIZE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Squalene monooxygenase, putative 3.066e-25
Complete
sp_v3.0_unigene14055 SustainPine v3.0 2192
AutoFact: Carotenoid isomerase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8J9E9_CHLRE 0.0
FL-Next: sp=Prolycopene isomerase, chloroplastic; Solanum lycopersicum (Tomato) (Lycopersicon esculentum). 0.0
Sma3: Carotenoid isomerase 3.682e-31
C-terminus
sp_v3.0_unigene14976 SustainPine v3.0 450
AutoFact: nuclear ribonuclease Z [Arabidopsis thaliana] sp|Q8LGU7.3|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName: Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3 endonuclease; AltName: Full=tRNase Z emb|CAD22100.1| RNase Z [Arabidop 6.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear ribonuclease Z 8.108e-18
N-terminus
sp_v3.0_unigene15089 SustainPine v3.0 1425
AutoFact: Pseudouridine synthase (Fragment) n=2 Tax=Vitis vinifera RepID=D7T696_VITVI 0.0
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 1.624e-22
Putative Complete
sp_v3.0_unigene15509 SustainPine v3.0 1672
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AE97_PICSI 0.0
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 6.152e-23
Complete
sp_v3.0_unigene15791 SustainPine v3.0 436
AutoFact: tRNA-dihydrouridine synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKB4_PHYPA 7.0e-16
FL-Next: sp=tRNA-dihydrouridine synthase; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene16493 SustainPine v3.0 781
AutoFact: nuclear ribonuclease Z [Arabidopsis thaliana] sp|Q8LGU7.3|RNZN_ARATH RecName: Full=Nuclear ribonuclease Z; Short=RNase Z; AltName: Full=Zinc phosphodiesterase NUZ; AltName: Full=tRNA 3 endonuclease; AltName: Full=tRNase Z emb|CAD22100.1| RNase Z [Arabidop 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Nuclear ribonuclease Z 7.816e-18
C-terminus
sp_v3.0_unigene16587 SustainPine v3.0 1748
AutoFact: eukaryotic tRNA isopentenyltransferase [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Adenylate isopentenyltransferase 0.0
Complete
sp_v3.0_unigene18184 SustainPine v3.0 1010
AutoFact: Probable pyridoxal biosynthesis protein PDX1 n=2 Tax=Spermatophyta RepID=PDX1_GINBI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pyridoxine biosynthesis protein 1.981e-15
Complete
sp_v3.0_unigene19257 SustainPine v3.0 3377
AutoFact: pfam04146, YTH, YT521-B-like domain 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Yth domain-containing protein, putative 2.106e-07
Complete
sp_v3.0_unigene20371 SustainPine v3.0 1560
AutoFact: Squalene monooxygenase, putative n=1 Tax=Ricinus communis RepID=B9SX91_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Squalene monooxygenase, putative 5.754e-21
Putative N-terminus
sp_v3.0_unigene24081 SustainPine v3.0 396
AutoFact: Zinc finger protein n=1 Tax=Ciona intestinalis RepID=Q1RLG4_CIOIN 3.0e-28
FL-Next: sp=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like; Oryza sativa subsp. japonica (Rice). 0.0
Putative C-terminus
sp_v3.0_unigene27105 SustainPine v3.0 550
AutoFact: Pseudouridine synthase n=1 Tax=Picea sitchensis RepID=D5AA47_PICSI 0.0
FL-Next: sp=Pseudouridine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Pseudouridylate synthase 1.608e-16
C-terminus
sp_v3.0_unigene29031 SustainPine v3.0 772
AutoFact: [J] COG0042 tRNA-dihydrouridine synthase 4.0e-08
FL-Next: tr=AT3G63510 protein; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain