Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: Chromosome chr3 scaffold_8, whole genome shotgun sequence

Source: Description from Sma3


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene2725 SustainPine v3.0 3491
AutoFact: Coatomer subunit gamma (Fragment) n=4 Tax=rosids RepID=D7TQ06_VITVI 0.0
FL-Next: sp=Coatomer subunit gamma-2; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene3473 SustainPine v3.0 3013
AutoFact: 3-ketoacyl-CoA synthase n=2 Tax=Populus trichocarpa RepID=B9H0R8_POPTR 0.0
FL-Next: sp=3-ketoacyl-CoA synthase 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene3506 SustainPine v3.0 2695
AutoFact: Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene6463 SustainPine v3.0 3726
AutoFact: Presequence protease 1 [Arabidopsis thaliana] sp|Q9LJL3.2|PREP1_ARATH RecName: Full=Presequence protease 1, chloroplastic/mitochondrial; Short=AtPreP1; Short=PreP 1; AltName: Full=Zinc metalloprotease 1; Short=AtZnMP1; Flags: Precursor gb|AAL90904.1| AT3g 0.0
FL-Next: sp=Presequence protease 1, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene6757 SustainPine v3.0 3008
AutoFact: putative replication licensing factor MCM4 [Oryza sativa Japonica Group] 0.0
FL-Next: sp=Protein PROLIFERA; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene6906 SustainPine v3.0 2661
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_1.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CQ58_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene7348 SustainPine v3.0 2688
AutoFact: Phloem calmodulin-like-domain protein kinase PCPK1 n=3 Tax=fabids RepID=Q8LPV9_CUCMA 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene13992 SustainPine v3.0 2116
AutoFact: phenylalanyl-tRNA synthetase alpha chain [Arabidopsis thaliana] sp|Q9T034.3|SYFA_ARATH RecName: Full=Probable phenylalanyl-tRNA synthetase alpha chain; AltName: Full=Phenylalanine--tRNA ligase alpha chain; Short=PheRS gb|AAM19830.1| AT4g39280/T22F8_180 [A 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene17969 SustainPine v3.0 3160
AutoFact: V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] gb|AAL31187.1| AT4g39080/F19H22_180 [Arabidopsis thaliana] gb|AAO11531.1| At4g39080/F19H22_180 [Arabidopsis thaliana] dbj|BAE99335.1| hypothetical protein [Arabidopsis thaliana] gb|AEE87015.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene22713 SustainPine v3.0 660
AutoFact: Amidase family protein [Arabidopsis thaliana] emb|CAB45449.1| amidase-like protein [Arabidopsis thaliana] emb|CAB80205.1| amidase-like protein [Arabidopsis thaliana] gb|AEE86432.1| Amidase family protein [Arabidopsis thaliana] 1.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 2.748e-11
C-terminus
sp_v3.0_unigene34970 SustainPine v3.0 794
AutoFact: Gibberellin 20 oxidase, putative n=1 Tax=Ricinus communis RepID=B9RZI6_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 5.318e-13
C-terminus
sp_v3.0_unigene58868 SustainPine v3.0 328
AutoFact: Putative oxylase protein (Fragment) n=1 Tax=Pinus pinaster RepID=Q8VX86_PINPS 9.99995e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 5.165e-14
Internal
sp_v3.0_unigene65561 SustainPine v3.0 250
AutoFact: Gibberellin 20 oxidase, putative n=1 Tax=Ricinus communis RepID=B9RZI6_RICCO 1.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 7.27e-17
Internal
sp_v3.0_unigene72186 SustainPine v3.0 286
AutoFact: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] dbj|BAB01697.1| oxidase-like protein [Arabidopsis thaliana] gb|AAO22576.1| unknown protein [Arabidopsis thaliana] gb|AEE76181.1| 2-oxoglutarate (2OG) and Fe(II)-depend 8.0e-25
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 2.904e-15
Putative C-terminus
sp_v3.0_unigene72518 SustainPine v3.0 237
AutoFact: pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily 9.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 2.783e-17
Internal
sp_v3.0_unigene94264 SustainPine v3.0 3143
AutoFact: V-type H+-transporting ATPase subunit I [Arabidopsis thaliana] gb|AAL31187.1| AT4g39080/F19H22_180 [Arabidopsis thaliana] gb|AAO11531.1| At4g39080/F19H22_180 [Arabidopsis thaliana] dbj|BAE99335.1| hypothetical protein [Arabidopsis thaliana] gb|AEE87015.1| 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene143053 SustainPine v3.0 503
AutoFact: Phenylcoumaran benzylic ether reductase homolog TH6 n=4 Tax=Pinaceae RepID=Q9M523_TSUHE 7.0e-21
FL-Next: tr=Phenylcoumaran benzylic ether reductase homolog TP5; Tsuga heterophylla (Western hemlock) (Abies heterophylla). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 9.652e-10
C-terminus
sp_v3.0_unigene143187 SustainPine v3.0 809
AutoFact: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana] dbj|BAB01696.1| oxylase-like protein [Arabidopsis thaliana] gb|AAM20659.1| unknown protein [Arabidopsis thaliana] gb|AAN15625.1| unknown protein [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 2.419e-13
C-terminus
sp_v3.0_unigene143806 SustainPine v3.0 576
AutoFact: pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily 1.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 3.453e-15
C-terminus
sp_v3.0_unigene144306 SustainPine v3.0 527
AutoFact: Gibberellin 20 oxidase, putative n=1 Tax=Ricinus communis RepID=B9RZI6_RICCO 1.0e-21
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr3 scaffold_8, whole genome shotgun sequence 4.099e-10
C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain