Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: DNA topoisomerase (ATP-hydrolyzing) activity

Term: GO:0003918  Help

Source: GO from Sma3

Ontology: Molecular Function


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene1243 SustainPine v3.0 3732
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
N-terminus
sp_v3.0_unigene3273 SustainPine v3.0 2627
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 5.669e-09
Complete
sp_v3.0_unigene5399 SustainPine v3.0 2312
AutoFact: putative topoisomerase VI subunit B [Oryza sativa Indica Group] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Chromosome chr6 scaffold_3, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene5766 SustainPine v3.0 2502
AutoFact: DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_MICSR 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 0.0
Putative C-terminus
sp_v3.0_unigene9121 SustainPine v3.0 1933
AutoFact: DNA topoisomerase 1 beta [Arabidopsis thaliana] dbj|BAB08548.1| DNA topoisomerase I [Arabidopsis thaliana] dbj|BAE98926.1| DNA topoisomerase I like protein [Arabidopsis thaliana] gb|AED96615.1| DNA topoisomerase 1 beta [Arabidopsis thaliana] 0.0
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 4.127e-25
C-terminus
sp_v3.0_unigene19456 SustainPine v3.0 2550
AutoFact: Whole genome shotgun sequence of line PN40024, scaffold_59.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TE60_VITVI 1.4013e-45
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene23476 SustainPine v3.0 1318
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 0.0
N-terminus
sp_v3.0_unigene24154 SustainPine v3.0 1126
AutoFact: DNA topoisomerase II, putative n=1 Tax=Ricinus communis RepID=B9RVN3_RICCO 4.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene28419 SustainPine v3.0 2692
AutoFact: predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=UPI0001621F83 0.0
FL-Next: sp=DNA topoisomerase 6 subunit A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr8 scaffold_29, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene34340 SustainPine v3.0 623
AutoFact: DNA topoisomerase 6 subunit A [Arabidopsis thaliana] ref|XP_002870991.1| hypothetical protein ARALYDRAFT_487058 [Arabidopsis lyrata subsp. lyrata] sp|Q9LZ03.1|TOP6A_ARATH RecName: Full=DNA topoisomerase 6 subunit A; Short=AtTOP6A; AltName: Full=Meiotic re 0.0
FL-Next: sp=DNA topoisomerase 6 subunit A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase 4.425e-08
C-terminus
sp_v3.0_unigene45816 SustainPine v3.0 443
AutoFact: PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62 0.0
FL-Next: sp=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 7.399e-09
Internal
sp_v3.0_unigene46711 SustainPine v3.0 339
AutoFact: DNA topoisomerase 2 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RWX5_PHYPA 5.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 9.818e-26
N-terminus
sp_v3.0_unigene52792 SustainPine v3.0 181
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 3.0e-14
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 5.206e-20
Internal
sp_v3.0_unigene56621 SustainPine v3.0 176
AutoFact: DNA topoisomerase 2 n=1 Tax=Nicotiana tabacum RepID=Q8GSC4_TOBAC 1.0e-18
FL-Next: sp=DNA topoisomerase 2; Pisum sativum (Garden pea). 0.0
Sma3: DNA topoisomerase 2 3.095e-35
Internal
sp_v3.0_unigene57192 SustainPine v3.0 272
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 2.0e-16
FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 3.06e-09
Internal
sp_v3.0_unigene58359 SustainPine v3.0 232
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 4.0e-12
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 1.459e-38
Internal
sp_v3.0_unigene58528 SustainPine v3.0 221
AutoFact: DNA topoisomerase 2 n=1 Tax=Nicotiana tabacum RepID=Q8GSC4_TOBAC 4.0e-10
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 4.921e-32
Internal
sp_v3.0_unigene65103 SustainPine v3.0 257
AutoFact: Probable DNA gyrase subunit A, chloroplastic/mitochondrial n=2 Tax=Arabidopsis RepID=GYRA_ARATH 2.0e-16
FL-Next: sp=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene76805 SustainPine v3.0 102
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 2.0e-09
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 1.565e-22
Internal
sp_v3.0_unigene77106 SustainPine v3.0 208
AutoFact: Topoisomerase I n=1 Tax=Pisum sativum RepID=O24307_PEA 7.0e-26
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase I 2.348e-21
Putative C-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain