Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromosome

Term: GO:0005694  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene149345 SustainPine v3.0 218
AutoFact: F1L3.28 n=1 Tax=Arabidopsis thaliana RepID=Q9LNP7_ARATH 1.0e-33
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Myosin XI 2.485e-27
Internal
sp_v3.0_unigene151726 SustainPine v3.0 352
AutoFact: Structural maintenance of chromosomes protein 1A n=1 Tax=Ascaris suum RepID=F1KRD4_ASCSU 2.0e-24
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
N-terminus
sp_v3.0_unigene151812 SustainPine v3.0 543
AutoFact: Topoisomerase IV subunit A n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHZ0_9GAMM 0.0
FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 7.399e-09
Internal
sp_v3.0_unigene151980 SustainPine v3.0 274
AutoFact: Structural maintenance of chromosomes 1-like 1 (Fragment) n=2 Tax=Microtus RepID=D5KWP1_MICAR 2.0e-27
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Condensin complex component 8.716e-08
N-terminus
sp_v3.0_unigene152974 SustainPine v3.0 366
AutoFact: DNA gyrase subunit B n=82 Tax=Bacteroidetes RepID=A6GX10_FLAPJ 7.9874e-44
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA gyrase subunit B, chloroplastic/mitochondrial 1.351e-08
Internal
sp_v3.0_unigene153318 SustainPine v3.0 508
AutoFact: Structural maintenance of chromosomes protein 3 n=50 Tax=Euteleostomi RepID=SMC3_HUMAN 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SMC3 protein 3.168e-09
N-terminus
sp_v3.0_unigene154721 SustainPine v3.0 336
AutoFact: Structural maintenance of chromosomes protein 4, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NXB1_PHYIT 4.0e-32
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.304e-09
Putative C-terminus
sp_v3.0_unigene156029 SustainPine v3.0 449
AutoFact: Cohesin complex subunit psm1 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NBC9_COPC7 1.00053e-42
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Condensin complex component 4.636e-08
Internal
sp_v3.0_unigene157501 SustainPine v3.0 478
AutoFact: PREDICTED: similar to U1 small nuclear ribonucleoprotein 1C n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001554AF4 7.0e-37
FL-Next: sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative N-terminus
sp_v3.0_unigene157868 SustainPine v3.0 345
AutoFact: Similar to uniprot|P04786 Saccharomyces cerevisiae YOL006c TOP1 DNA topoisomerase I n=1 Tax=Candida glabrata CBS 138 RepID=Q6FNH4_CANGA 2.0e-18
FL-Next: sp=DNA topoisomerase 1; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene159067 SustainPine v3.0 370
AutoFact: PREDICTED: structural maintenance of chromosomes protein 3 [Apis mellifera] 5.0e-14
FL-Next: tr=Condensin complex component SMC3; Physcomitrella patens subsp. patens (Moss). 0.0
Internal
sp_v3.0_unigene159556 SustainPine v3.0 435
AutoFact: structural maintenance of chromosomes protein 2-2 [Arabidopsis thaliana] sp|Q9SN90.1|SMC22_ARATH RecName: Full=Structural maintenance of chromosomes protein 2-2; Short=AtSMC2-2; AltName: Full=Chromosome-associated protein E-2; Short=AtCAP-E2 emb|CAB61972. 1.0e-24
FL-Next: sp=Structural maintenance of chromosomes protein 2-2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Condensin complex components subunit 4.493e-08
Internal
sp_v3.0_unigene160034 SustainPine v3.0 432
AutoFact: DNA topoisomerase n=5 Tax=Poaceae RepID=Q0J0S6_ORYSJ 0.0
FL-Next: sp=DNA topoisomerase; Vitis vinifera (Grape). 0.0
Sma3: Putative DNA topoisomerase III beta 1.251e-08
Internal
sp_v3.0_unigene160203 SustainPine v3.0 336
AutoFact: RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb|CAA66480.1| transcription factor [Vicia faba var. minor] 1.0e-33
FL-Next: sp=FACT complex subunit SSRP1; Vicia faba (Broad bean) (Faba vulgaris). 0.0
Sma3: Recombination signal sequence recognition protein 1 4.031e-17
Internal
sp_v3.0_unigene161646 SustainPine v3.0 311
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 1.4013e-45
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.694e-09
Internal
sp_v3.0_unigene161857 SustainPine v3.0 155
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 1.0e-07
FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
Internal
sp_v3.0_unigene161996 SustainPine v3.0 237
AutoFact: DNA repair protein RAD50 [Arabidopsis thaliana] sp|Q9SL02.2|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb|AAF36810.1|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb|AAD15407.2| putative RAD50 DNA repair protein 9.0e-29
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rad50 DNA repair/recombination protein 9.837e-09
C-terminus
sp_v3.0_unigene162294 SustainPine v3.0 281
AutoFact: Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.495e-09
Internal
sp_v3.0_unigene162318 SustainPine v3.0 314
AutoFact: structural maintenance of chromosomes 5 [Arabidopsis thaliana] emb|CAC01791.1| putative protein [Arabidopsis thaliana] gb|AED92224.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana] 3.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene162511 SustainPine v3.0 175
AutoFact: putative RAD50 DNA repair protein [Arabidopsis thaliana] 0.0001
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain