Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromosome

Term: GO:0005694  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene49369 SustainPine v3.0 341
AutoFact: RVT_1 domain containing protein 8.0e-05
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene50719 SustainPine v3.0 195
AutoFact: Global transcription factor group (Fragment) n=1 Tax=Populus trichocarpa RepID=B9I6M9_POPTR 8.0e-20
FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.911e-13
Internal
sp_v3.0_unigene51050 SustainPine v3.0 403
AutoFact: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9SPT5_RICCO 4.0e-26
FL-Next: sp=DNA topoisomerase; Ricinus communis (Castor bean). 0.0
Internal
sp_v3.0_unigene51577 SustainPine v3.0 701
AutoFact: RVT_1 domain containing protein 3.0e-10
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
N-terminus
sp_v3.0_unigene52119 SustainPine v3.0 384
AutoFact: putative RAD50 DNA repair protein [Arabidopsis thaliana] 9.0e-13
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52567 SustainPine v3.0 375
AutoFact: DNA mismatch repair protein [Shewanella putrefaciens CN-32] gb|ABP76994.1| DNA mismatch repair protein MutL [Shewanella putrefaciens CN-32] 9.0e-16
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
N-terminus
sp_v3.0_unigene52594 SustainPine v3.0 231
AutoFact: Unassigned protein
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene52759 SustainPine v3.0 120
AutoFact: FACT complex subunit SPT16 n=4 Tax=Camelineae RepID=SPT16_ARATH 4.0e-07
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.05e-13
Internal
sp_v3.0_unigene52792 SustainPine v3.0 181
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 3.0e-14
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 5.206e-20
Internal
sp_v3.0_unigene53184 SustainPine v3.0 348
AutoFact: Serine/threonine-protein kinase ATR n=4 Tax=Oryza sativa RepID=ATR_ORYSJ 1.0e-38
FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Serine/threonine-protein kinase ATR 1.251e-08
Internal
sp_v3.0_unigene54347 SustainPine v3.0 486
AutoFact: DNA topoisomerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3N3_PHYPA 0.0
FL-Next: sp=DNA topoisomerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Putative DNA topoisomerase III beta 9.517e-08
Internal
sp_v3.0_unigene55918 SustainPine v3.0 383
AutoFact: Nucleosome binding protein n=7 Tax=Ajellomyces RepID=C5G7F6_AJEDR 1.0e-16
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Internal
sp_v3.0_unigene56201 SustainPine v3.0 266
AutoFact: myosin XI [Nicotiana tabacum] 2.0e-34
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Myosin XI, putative 3.219e-23
Internal
sp_v3.0_unigene56302 SustainPine v3.0 184
AutoFact: Unassigned protein 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene56621 SustainPine v3.0 176
AutoFact: DNA topoisomerase 2 n=1 Tax=Nicotiana tabacum RepID=Q8GSC4_TOBAC 1.0e-18
FL-Next: sp=DNA topoisomerase 2; Pisum sativum (Garden pea). 0.0
Sma3: DNA topoisomerase 2 3.095e-35
Internal
sp_v3.0_unigene56877 SustainPine v3.0 262
AutoFact: Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF 4.0e-29
FL-Next: sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion. 0.0
Putative N-terminus
sp_v3.0_unigene57032 SustainPine v3.0 374
AutoFact: PREDICTED: similar to leucine zipper protein, partial [Strongylocentrotus purpuratus] ref|XP_001189267.1| PREDICTED: similar to leucine zipper protein, partial [Strongylocentrotus purpuratus] 4.0e-06
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: SMC3 protein 7.054e-10
Internal
sp_v3.0_unigene57192 SustainPine v3.0 272
AutoFact: DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE 2.0e-16
FL-Next: sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana. 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 3.06e-09
Internal
sp_v3.0_unigene57206 SustainPine v3.0 185
AutoFact: putative SMC protein [Oryza sativa Japonica Group] gb|EEC79459.1| hypothetical protein OsI_20467 [Oryza sativa Indica Group] gb|EEE64226.1| hypothetical protein OsJ_19059 [Oryza sativa Japonica Group] 2.0e-22
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.848e-09
Internal
sp_v3.0_unigene57693 SustainPine v3.0 379
AutoFact: Serine/threonine-protein kinase ATR n=4 Tax=Oryza sativa RepID=ATR_ORYSJ 5.0e-21
FL-Next: sp=Serine/threonine-protein kinase ATR; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Serine/threonine-protein kinase ATR 8.233e-09
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain