Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromosome

Term: GO:0005694  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene21790 SustainPine v3.0 716
AutoFact: FACT complex subunit SPT16 n=4 Tax=Oryza sativa RepID=SPT16_ORYSJ 7.0e-28
FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.911e-13
N-terminus
sp_v3.0_unigene23476 SustainPine v3.0 1318
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 0.0
N-terminus
sp_v3.0_unigene24154 SustainPine v3.0 1126
AutoFact: DNA topoisomerase II, putative n=1 Tax=Ricinus communis RepID=B9RVN3_RICCO 4.0e-12
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene26723 SustainPine v3.0 367
AutoFact: Myosin heavy chain class XI E2 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q6UAL2_ORYSJ 0.0
FL-Next: tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida). 0.0
Sma3: Myosin XI, putative 4.141e-23
Internal
sp_v3.0_unigene28419 SustainPine v3.0 2692
AutoFact: predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=UPI0001621F83 0.0
FL-Next: sp=DNA topoisomerase 6 subunit A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Chromosome chr8 scaffold_29, whole genome shotgun sequence 0.0
Complete
sp_v3.0_unigene30373 SustainPine v3.0 3681
AutoFact: structural maintenance of chromosomes 5 [Arabidopsis thaliana] emb|CAC01791.1| putative protein [Arabidopsis thaliana] gb|AED92224.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana] 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene34340 SustainPine v3.0 623
AutoFact: DNA topoisomerase 6 subunit A [Arabidopsis thaliana] ref|XP_002870991.1| hypothetical protein ARALYDRAFT_487058 [Arabidopsis lyrata subsp. lyrata] sp|Q9LZ03.1|TOP6A_ARATH RecName: Full=DNA topoisomerase 6 subunit A; Short=AtTOP6A; AltName: Full=Meiotic re 0.0
FL-Next: sp=DNA topoisomerase 6 subunit A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Topoisomerase 4.425e-08
C-terminus
sp_v3.0_unigene34624 SustainPine v3.0 925
AutoFact: DNA topoisomerase n=1 Tax=Ricinus communis RepID=B9RRL8_RICCO 0.0
FL-Next: sp=DNA topoisomerase; Ricinus communis (Castor bean). 0.0
Sma3: Putative DNA topoisomerase III beta 2.836e-08
Internal
sp_v3.0_unigene35042 SustainPine v3.0 640
AutoFact: myosin XI [Nicotiana tabacum] 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Myosin XI, putative 4.511e-23
Internal
sp_v3.0_unigene35182 SustainPine v3.0 427
AutoFact: myosin XI B [Oryza sativa Japonica Group] 0.0
FL-Next: tr=Myosin XI B; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Myosin XI 2.536e-27
Internal
sp_v3.0_unigene37454 SustainPine v3.0 752
AutoFact: Myosin class 11-1 n=1 Tax=Adiantum capillus-veneris RepID=Q5NTX1_ADICA 0.0
FL-Next: tr=Myosin class 11-1; Adiantum capillus-veneris (Maidenhair fern). 0.0
Sma3: Myosin XI, putative 3.053e-19
Internal
sp_v3.0_unigene37484 SustainPine v3.0 716
AutoFact: Cast multi-domain protein 2.0e-06
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene41071 SustainPine v3.0 439
AutoFact: serine/threonine-protein kinase ATR [Arabidopsis thaliana] sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; Al 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Serine/threonine-protein kinase ATR 7.595e-08
Putative N-terminus
sp_v3.0_unigene41207 SustainPine v3.0 367
AutoFact: Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH 7.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.304e-09
C-terminus
sp_v3.0_unigene43918 SustainPine v3.0 265
AutoFact: Myosin XIa n=3 Tax=Physcomitrella patens RepID=D6R266_9BRYO 6.0e-39
FL-Next: tr=Predicted protein; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Myosin XI, putative 1.303e-15
Internal
sp_v3.0_unigene44621 SustainPine v3.0 208
AutoFact: DNA topoisomerase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U3N3_PHYPA 2.0e-24
FL-Next: sp=DNA topoisomerase; Physcomitrella patens subsp. patens (Moss). 0.0
Sma3: Putative DNA topoisomerase III beta 5.331e-09
Internal
sp_v3.0_unigene45816 SustainPine v3.0 443
AutoFact: PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62 0.0
FL-Next: sp=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Probable DNA gyrase subunit A, chloroplastic/mitochondrial 7.399e-09
Internal
sp_v3.0_unigene45833 SustainPine v3.0 237
AutoFact: Unassigned protein
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Internal
sp_v3.0_unigene46711 SustainPine v3.0 339
AutoFact: DNA topoisomerase 2 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RWX5_PHYPA 5.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 9.818e-26
N-terminus
sp_v3.0_unigene48111 SustainPine v3.0 353
AutoFact: Myosin 2 n=6 Tax=Arabidopsis RepID=F4K0A6_ARATH 0.0
FL-Next: tr=Myosin 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Myosin 1.263e-24
Internal

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain