Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: chromosome

Term: GO:0005694  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene163085 SustainPine v3.0 205
AutoFact: DNA recombination/repair protein n=1 Tax=Dictyostelium fasciculatum RepID=F4PXH9_9MYCE 2.0e-15
FL-Next: sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: Rad50 DNA repair/recombination protein 8.081e-09
Internal
sp_v3.0_unigene163278 SustainPine v3.0 113
AutoFact: Unassigned protein
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: SMC4 protein 8.772e-06
Internal
sp_v3.0_unigene165174 SustainPine v3.0 197
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 1.0e-23
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 0.0
Internal
sp_v3.0_unigene166676 SustainPine v3.0 408
AutoFact: FACT complex subunit SSRP1 n=1 Tax=Catharanthus roseus RepID=SSRP1_CATRO 3.0e-10
FL-Next: sp=FACT complex subunit SSRP1; Catharanthus roseus (Madagascar periwinkle) (Vinca rosea). 0.0
Sma3: Recombination signal sequence recognition protein 1 1.217e-12
Internal
sp_v3.0_unigene167813 SustainPine v3.0 123
AutoFact: Putative SMC protein (ISS) (Fragment) n=1 Tax=Ostreococcus tauri RepID=Q017K9_OSTTA 1.0e-15
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Structural maintenance of chromosomes protein 4 2.304e-09
Internal
sp_v3.0_unigene168175 SustainPine v3.0 274
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 1.0e-33
FL-Next: sp=DNA topoisomerase 2; Pisum sativum (Garden pea). 0.0
Sma3: DNA topoisomerase 2 5.04047e-42
Internal
sp_v3.0_unigene168348 SustainPine v3.0 205
AutoFact: DNA topoisomerase 2 n=2 Tax=Oryza sativa Japonica Group RepID=Q6Z8D9_ORYSJ 5.0e-29
FL-Next: sp=DNA topoisomerase 2; Arabidopsis thaliana (Mouse-ear cress). 0.0
Sma3: DNA topoisomerase 2 0.0
Internal
sp_v3.0_unigene183563 SustainPine v3.0 816
AutoFact: DNA topoisomerase 2 n=2 Tax=Malus x domestica RepID=Q2L363_MALDO 3.0e-08
FL-Next: sp=DNA topoisomerase 2; Pisum sativum (Garden pea). 0.0
Sma3: DNA topoisomerase 2 5.327e-32
Internal
sp_v3.0_unigene184357 SustainPine v3.0 635
AutoFact: Structural maintenance of chromosomes 1 protein n=1 Tax=Arabidopsis thaliana RepID=Q6Q1P4_ARATH 0.0
FL-Next: sp=Structural maintenance of chromosomes protein 4; Arabidopsis thaliana (Mouse-ear cress). 0.0
Internal
sp_v3.0_unigene185845 SustainPine v3.0 245
AutoFact: Strong similarity to F22O13.22 gi|3063460 myosin homolog from A. thaliana BAC gb|AC003981 [Arabidopsis thaliana] 3.0e-19
FL-Next: tr=Myosin XI; Marchantia polymorpha (Liverwort) (Marchantia aquatica). 0.0
Sma3: Myosin XI, putative 9.796e-13
Putative C-terminus
sp_v3.0_unigene187880 SustainPine v3.0 585
AutoFact: Unassigned protein 8.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene191581 SustainPine v3.0 379
AutoFact: Myosin XI, putative n=1 Tax=Ricinus communis RepID=B9RWS3_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Vitis vinifera (Grape). 0.0
Sma3: Myosin XI 1.207e-24
Internal
sp_v3.0_unigene192650 SustainPine v3.0 389
AutoFact: ataxia-telangiectasia mutated protein (Atm) [Arabidopsis thaliana] 2.0e-25
FL-Next: sp=Serine/threonine-protein kinase ATM; Arabidopsis thaliana (Mouse-ear cress). 0.0
C-terminus
sp_v3.0_unigene192667 SustainPine v3.0 439
AutoFact: E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] gb|ABJ17142.1| At1g55255 [Arabidopsis thaliana] gb|AEE33211.1| E3 ubiquitin-protein ligase BRE1-like 2 [Arabidopsis thaliana] 7.0e-23
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
C-terminus
sp_v3.0_unigene192990 SustainPine v3.0 426
AutoFact: Structural maintenance of chromosomes 5 smc5, putative n=1 Tax=Ricinus communis RepID=B9RVK1_RICCO 4.0e-30
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative C-terminus
sp_v3.0_unigene196426 SustainPine v3.0 336
AutoFact: FACT complex subunit SPT16 n=4 Tax=Oryza sativa RepID=SPT16_ORYSJ 3.0e-27
FL-Next: sp=FACT complex subunit SPT16; Oryza sativa subsp. japonica (Rice). 0.0
Sma3: Facilitates chromatin transcription complex subunit SPT16 2.662e-13
Internal
sp_v3.0_unigene205757 SustainPine v3.0 622
AutoFact: structural maintenance of chromosomes 5 [Arabidopsis thaliana] emb|CAC01791.1| putative protein [Arabidopsis thaliana] gb|AED92224.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana] 2.00386e-43
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Complete
sp_v3.0_unigene206345 SustainPine v3.0 445
AutoFact: structural maintenance of chromosomes 5 [Arabidopsis thaliana] emb|CAC01791.1| putative protein [Arabidopsis thaliana] gb|AED92224.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana] 6.0e-34
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Putative Complete
sp_v3.0_unigene208319 SustainPine v3.0 481
AutoFact: Structural maintenance of chromosomes (SMC)-like protein n=2 Tax=Arabidopsis RepID=Q9M1T3_ARATH 1.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Condensin complex component 5.689e-08
Internal
sp_v3.0_unigene208781 SustainPine v3.0 252
AutoFact: DNA topoisomerase 2 (Fragment) n=1 Tax=Vitis vinifera RepID=D7T341_VITVI 4.0e-13
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: DNA topoisomerase 2 5.79e-26
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain