Sustainpine_db
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Assembly Name: SustainPine v3.0

Name: retromer complex

Term: GO:0030904  Help

Source: GO from Sma3

Ontology: Cellular Component


UniGenes with this annotation:

Sequence Assembly Length (nt)
DescriptionE-value
Full-Length
sp_v3.0_unigene9380 SustainPine v3.0 1775
AutoFact: Vacuolar protein sorting-associated protein 26 n=4 Tax=Arabidopsis RepID=F4HYH6_ARATH 0.0
FL-Next: sp=Vacuolar protein sorting-associated protein 26A; Arabidopsis thaliana (Mouse-ear cress). 0.0
Putative Complete
sp_v3.0_unigene18706 SustainPine v3.0 1797
AutoFact: Vacuolar protein sorting 26, vps26, putative n=1 Tax=Ricinus communis RepID=B9T2W4_RICCO 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Putative uncharacterized protein 0.0
Complete
sp_v3.0_unigene24252 SustainPine v3.0 697
AutoFact: Vacuolar protein sorting-associated protein 26 n=1 Tax=Dictyostelium discoideum RepID=VPS26_DICDI 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting 26, vps26, putative 4.107e-09
C-terminus
sp_v3.0_unigene26082 SustainPine v3.0 256
AutoFact: Vacuolar protein sorting-associated protein 26B n=7 Tax=Clupeocephala RepID=VP26B_DANRE 8.0e-35
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting 26, vps26, putative 4.107e-09
Putative C-terminus
sp_v3.0_unigene28347 SustainPine v3.0 880
AutoFact: vacuolar sorting protein vps29 [Aedes aegypti] ref|XP_001660257.1| vacuolar sorting protein vps29 [Aedes aegypti] gb|ABF18153.1| membrane coat complex retromer subunit VPS29/PEP11 [Aedes aegypti] gb|EAT36754.1| vacuolar sorting protein vps29 [Aedes aegypt 2.0e-37
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting, putative 1.091e-08
C-terminus
sp_v3.0_unigene38027 SustainPine v3.0 496
AutoFact: vacuolar protein sorting 29 protein [Arabidopsis thaliana] ref|NP_974400.1| vacuolar protein sorting 29 protein [Arabidopsis thaliana] ref|NP_974399.2| vacuolar protein sorting 29 protein [Arabidopsis thaliana] emb|CAB41864.1| putative protein [Arabidopsi 2.0e-29
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting, putative 6.113e-09
N-terminus
sp_v3.0_unigene152183 SustainPine v3.0 331
AutoFact: PREDICTED: vacuolar protein sorting 29 n=1 Tax=Oryctolagus cuniculus RepID=UPI0001CE1A25 5.99994e-41
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting, putative 6.492e-09
Internal
sp_v3.0_unigene154994 SustainPine v3.0 407
AutoFact: Chain A, Crystal Structure Of Mouse Vps29 Complexed With Mn2+ pdb|1Z2W|B Chain B, Crystal Structure Of Mouse Vps29 Complexed With Mn2+ pdb|1Z2X|A Chain A, Crystal Structure Of Mouse Vps29 pdb|1Z2X|B Chain B, Crystal Structure Of Mouse Vps29 pdb|3PSN|A Cha 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting, putative 1.091e-08
N-terminus
sp_v3.0_unigene155330 SustainPine v3.0 269
AutoFact: [R] COG0622 Predicted phosphoesterase 1.0e-17
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting, putative 8.558e-09
Putative C-terminus
sp_v3.0_unigene157192 SustainPine v3.0 522
AutoFact: PREDICTED: vacuolar protein sorting 26 homolog B-like n=1 Tax=Saccoglossus kowalevskii RepID=UPI0001CBA3F0 0.0
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting 26, vps26, putative 4.107e-09
C-terminus
sp_v3.0_unigene157570 SustainPine v3.0 485
AutoFact: [R] COG0622 Predicted phosphoesterase 5.0e-28
FL-Next: tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). 0.0
Sma3: Vacuolar protein sorting, putative 7.082e-09
N-terminus

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain